RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 HIST1H2BKO60814 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BJP06899 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BOP23527 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BBP33778 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BDP58876 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BCP62807 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST2H2BEQ16778 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 SPINK13Q1W4C9 94 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 ANXA2RQ3ZCQ2 193 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BHQ93079 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BNQ99877 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 HIST1H2BMQ99879 126 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 C1orf159Q96HA4 380 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 PGPEP1LA6NFU8 196 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 CSTL1Q9H114 145 aa10.56□□□□□ -0.72
LDLR-201ENST00000252444 NCR2O95944 276 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 SSBP2P81877 361 aaPredicted RBP10.55□□□□□ -0.72
LDLR-201ENST00000252444 NRGNQ92686 78 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 IGLC2P0DOY2 106 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 FAM167A-AS1Q96KT0 104 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 KLK15Q9H2R5 256 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 KIAA1549Q9HCM3 1950 aa10.55□□□□□ -0.72
LDLR-201ENST00000252444 TRAV8-1A0A0A6YYK1 113 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 TNFRSF6BO95407 300 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 WFDC11Q8NEX6 87 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 C8orf49Q96NF6 230 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 AGPAT4-IT1Q9H0P7 198 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 C16orf95Q9H693 158 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 SLURP1P55000 103 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 ZC2HC1AQ96GY0 325 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 XCL2Q9UBD3 114 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 ZNF318Q5VUA4 2279 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 GZMBP10144 247 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 PATE2Q6UY27 113 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 SSBP4Q9BWG4 385 aaPredicted RBP10.54□□□□□ -0.72
LDLR-201ENST00000252444 TMEM238C9JI98 176 aa10.54□□□□□ -0.72
LDLR-201ENST00000252444 C14orf178Q8N769 122 aaPredicted RBP10.53□□□□□ -0.72
LDLR-201ENST00000252444 FABP2P12104 132 aa10.53□□□□□ -0.72
LDLR-201ENST00000252444 RPL24P83731 157 aaKnown RBP10.53□□□□□ -0.72
LDLR-201ENST00000252444 ATRAIDQ6UW56 229 aa10.53□□□□□ -0.72
LDLR-201ENST00000252444 TMEM243Q9BU79 118 aa10.52□□□□□ -0.72
LDLR-201ENST00000252444 SPART-AS1P0CW21 52 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 Q6ZPA2 131 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 OVOL2Q9BRP0 275 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 PROP1O75360 226 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 DYNAPQ8N1N2 210 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 PRO1933Q9H354 126 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 KNCNA6PVL3 124 aa10.52□□□□□ -0.73
LDLR-201ENST00000252444 KLF5Q13887 457 aaPredicted RBP10.51□□□□□ -0.73
LDLR-201ENST00000252444 HLA-DRB4P13762 266 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 CCDC140Q96MF4 163 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 HLA-DRB4X5D2U9 266 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.51□□□□□ -0.73
LDLR-201ENST00000252444 SMIM13P0DJ93 91 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 ZNF702PQ9H963 129 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 IGHV1-24A0A0C4DH33 117 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 IGLV1-40P01703 118 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 BRWD1-AS2P59051 145 aa10.51□□□□□ -0.73
LDLR-201ENST00000252444 DIDO1Q9BTC0 2240 aaKnown RBP10.5□□□□□ -0.73
LDLR-201ENST00000252444 ADCYAP1P18509 176 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 HIST3H2BBQ8N257 126 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 LY6G6DO95868 133 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 PTPRBP23467 1997 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 PSMB8P28062 276 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 IGFL4Q6B9Z1 124 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 LINC00518Q8N0U6 118 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 C18orf15Q96N68 181 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 CACNA1DQ01668 2161 aa10.5□□□□□ -0.73
LDLR-201ENST00000252444 IGKV1D-37A0A075B6S9 117 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 EREGO14944 169 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 FXYD7P58549 80 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 ZFHX2Q9C0A1 2572 aaPredicted RBP10.49□□□□□ -0.73
LDLR-201ENST00000252444 MYMXA0A1B0GTQ4 84 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 DDTP30046 118 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 Q6ZSV7 163 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 DAZ2Q13117 558 aaKnown RBP10.49□□□□□ -0.73
LDLR-201ENST00000252444 TMEM95Q3KNT9 176 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 DAZ4Q86SG3 579 aaKnown RBP10.49□□□□□ -0.73
LDLR-201ENST00000252444 DAZ3Q9NR90 486 aaKnown RBP10.49□□□□□ -0.73
LDLR-201ENST00000252444 SMIM2Q9BVW6 85 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 SPANXA1Q9NS26 97 aa10.49□□□□□ -0.73
LDLR-201ENST00000252444 A0A0J9YX75 114 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 CITED2Q99967 270 aaPredicted RBP10.48□□□□□ -0.73
LDLR-201ENST00000252444 NEGR1Q7Z3B1 354 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 NCOA6Q14686 2063 aaPredicted RBP10.48□□□□□ -0.73
LDLR-201ENST00000252444 TTC28Q96AY4 2481 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 MUC21A0A0G2JKD1 596 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 MUC21A0A140T8X8 626 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 ATP5G1P05496 136 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 SMAD5-AS1Q9Y6J3 95 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 EVI2AP22794 236 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 CTRLP40313 264 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 LINC00469Q8N7U9 141 aa10.48□□□□□ -0.73
LDLR-201ENST00000252444 MRPL51Q4U2R6 128 aaKnown RBP10.47□□□□□ -0.73
LDLR-201ENST00000252444 ARID1AO14497 2285 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 PRR31Q5SQ13 230 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 F5H768 121 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 HSD52Q0P140 79 aa10.47□□□□□ -0.73
LDLR-201ENST00000252444 CKS1BP61024 79 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms