RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 CD5LO43866 347 aa17.05■□□□□ 0.32
CCDC9-201ENST00000221922 SLC25A16P16260 332 aa17.05■□□□□ 0.32
CCDC9-201ENST00000221922 OR1N2Q8NGR9 330 aa17.05■□□□□ 0.32
CCDC9-201ENST00000221922 FABP5P3A8MUU1 101 aa17.04■□□□□ 0.32
CCDC9-201ENST00000221922 FGF6P10767 208 aa17.04■□□□□ 0.32
CCDC9-201ENST00000221922 GATA3P23771 443 aa17.04■□□□□ 0.32
CCDC9-201ENST00000221922 MRPL53Q96EL3 112 aaKnown RBP17.04■□□□□ 0.32
CCDC9-201ENST00000221922 U3KQE9 123 aa17.04■□□□□ 0.32
CCDC9-201ENST00000221922 TRGV3P03979 118 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 IGF1P05019 195 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 COX6B1P14854 86 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 VAMP3Q15836 100 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 NRGNQ92686 78 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 ANKRD39Q53RE8 183 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 RNF185Q96GF1 192 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 HIF1ANQ9NWT6 349 aa17.03■□□□□ 0.32
CCDC9-201ENST00000221922 A6NDX4 124 aa17.02■□□□□ 0.32
CCDC9-201ENST00000221922 LINC01546A6NGU7 62 aa17.02■□□□□ 0.32
CCDC9-201ENST00000221922 SMKR1H3BMG3 65 aa17.02■□□□□ 0.32
CCDC9-201ENST00000221922 ORM1P02763 201 aa17.02■□□□□ 0.32
CCDC9-201ENST00000221922 LINC01559Q495D7 138 aa17.02■□□□□ 0.32
CCDC9-201ENST00000221922 IGHV3-66A0A0C4DH42 116 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 H3BUA1 57 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 BRI3O95415 125 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 PPBPP02775 128 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 FOXE3Q13461 319 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 PRAC2D3DTV9 90 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 OR4C5Q8NGB2 326 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 IFI27L1Q96BM0 104 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 MSRB1Q9NZV6 116 aa17.01■□□□□ 0.31
CCDC9-201ENST00000221922 CACNG7P62955 275 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 SRSF1Q07955 248 aaKnown RBP eCLIP17■□□□□ 0.313e-7■■□□□ 13.1
CCDC9-201ENST00000221922 ERCC8Q13216 396 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 RNF182Q8N6D2 247 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 RNASE8Q8TDE3 154 aaKnown RBP17■□□□□ 0.31
CCDC9-201ENST00000221922 ZNF462Q96JM2 2506 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 H3BUX3 64 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 ARL3P36405 182 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 FXYD7P58549 80 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 LINC00527Q9UJ94 153 aa17■□□□□ 0.31
CCDC9-201ENST00000221922 CSMD1Q96PZ7 3565 aa16.99■□□□□ 0.31
CCDC9-201ENST00000221922 SPG11Q96JI7 2443 aa16.99■□□□□ 0.31
CCDC9-201ENST00000221922 UBR5O95071 2799 aaPredicted RBP16.99■□□□□ 0.31
CCDC9-201ENST00000221922 IGHG2P01859 326 aa16.99■□□□□ 0.31
CCDC9-201ENST00000221922 C8orf86Q6ZUL3 223 aa16.99■□□□□ 0.31
CCDC9-201ENST00000221922 BOD1L2Q8IYS8 172 aa16.99■□□□□ 0.31
CCDC9-201ENST00000221922 IGHV3OR16-13A0A075B7E8 117 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 IGHV3-74A0A0B4J1X5 117 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 ZNF207O43670 478 aaKnown RBP16.98■□□□□ 0.31
CCDC9-201ENST00000221922 PRSS57Q6UWY2 283 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 USMG5Q96IX5 58 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 SEC11AP67812 179 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 LY6EQ16553 131 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 TMEM97Q5BJF2 176 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 MAP1LC3AQ9H492 121 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 SVEP1Q4LDE5 3571 aa16.98■□□□□ 0.31
CCDC9-201ENST00000221922 A0A096LNT2 108 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 TRAV8-2A0A0B4J237 113 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 SNAI2O43623 268 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 ERASQ7Z444 233 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 IGHV3-49A0A0A0MS15 119 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 CBY3A6NI87 242 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 AVPP01185 164 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 TMEM78Q5T7P6 136 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 IL17RELQ6ZVW7 336 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 LINC01356Q8N9X3 169 aa16.97■□□□□ 0.31
CCDC9-201ENST00000221922 NDUFA4O00483 81 aa16.96■□□□□ 0.31
CCDC9-201ENST00000221922 UTP20O75691 2785 aaKnown RBP16.96■□□□□ 0.31
CCDC9-201ENST00000221922 PPIFP30405 207 aaKnown RBP16.95■□□□□ 0.3
CCDC9-201ENST00000221922 RBX1P62877 108 aa16.95■□□□□ 0.3
CCDC9-201ENST00000221922 GLMPQ8WWB7 406 aa16.95■□□□□ 0.3
CCDC9-201ENST00000221922 VPS13CQ709C8 3753 aa16.95■□□□□ 0.3
CCDC9-201ENST00000221922 SIVA1O15304 175 aa16.95■□□□□ 0.3
CCDC9-201ENST00000221922 AGPAT4-IT1Q9H0P7 198 aa16.95■□□□□ 0.3
CCDC9-201ENST00000221922 NXT2Q9NPJ8 142 aaKnown RBP16.95■□□□□ 0.3
CCDC9-201ENST00000221922 KMT2BQ9UMN6 2715 aaPredicted RBP16.94■□□□□ 0.3
CCDC9-201ENST00000221922 SMAD7O15105 426 aaKnown RBP16.94■□□□□ 0.3
CCDC9-201ENST00000221922 GAS8-AS1O95177 125 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 TNFRSF6BO95407 300 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 AMMECR1LQ6DCA0 310 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 C9orf47Q6ZRZ4 202 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 C9orf139Q6ZV77 190 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 OR9G4Q8NGQ1 327 aa16.94■□□□□ 0.3
CCDC9-201ENST00000221922 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.94■□□□□ 0.34e-7■■■■□ 21.8
CCDC9-201ENST00000221922 IGKV3D-20A0A0C4DH25 116 aa16.93■□□□□ 0.3
CCDC9-201ENST00000221922 C16orf92Q96LL3 132 aa16.93■□□□□ 0.3
CCDC9-201ENST00000221922 PEF1Q9UBV8 284 aaKnown RBP16.93■□□□□ 0.3
CCDC9-201ENST00000221922 FCER1GP30273 86 aa16.93■□□□□ 0.3
CCDC9-201ENST00000221922 J3QLI3 93 aa16.92■□□□□ 0.3
CCDC9-201ENST00000221922 C11orf21Q9P2W6 132 aa16.92■□□□□ 0.3
CCDC9-201ENST00000221922 A1L4Q6 167 aa16.92■□□□□ 0.3
CCDC9-201ENST00000221922 C7orf71A4D174 169 aa16.92■□□□□ 0.3
CCDC9-201ENST00000221922 TRAV8-6A0A0B4J262 113 aa16.91■□□□□ 0.3
CCDC9-201ENST00000221922 LEPP41159 167 aa16.91■□□□□ 0.3
CCDC9-201ENST00000221922 DKK2Q9UBU2 259 aa16.91■□□□□ 0.3
CCDC9-201ENST00000221922 A0A0G2JLM5 398 aa16.9■□□□□ 0.3
CCDC9-201ENST00000221922 ZMAT4Q9H898 229 aa16.9■□□□□ 0.3
CCDC9-201ENST00000221922 CELSR2Q9HCU4 2923 aa16.9■□□□□ 0.3
CCDC9-201ENST00000221922 TRBV12-3P01733 135 aa16.9■□□□□ 0.3
CCDC9-201ENST00000221922 PF4V1P10720 104 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms