RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 PAXXQ9BUH6 204 aa12.44□□□□□ -0.42
PNKP-230ENST00000638016 DYNC1H1Q14204 4646 aaKnown RBP12.43□□□□□ -0.42
PNKP-230ENST00000638016 ATP5G1P05496 136 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 ATP5G3P48201 142 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 ZNF493Q6ZR52 646 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 Q8TAT8 98 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 RNF141Q8WVD5 230 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 MRPL32Q9BYC8 188 aaKnown RBP12.43□□□□□ -0.42
PNKP-230ENST00000638016 AAMDCQ9H7C9 122 aa12.43□□□□□ -0.42
PNKP-230ENST00000638016 GAGE12BA1L429 117 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 C7orf71A4D174 169 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 CBY3A6NI87 242 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 KLLNB2CW77 178 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 C17orf112F2Z3M2 114 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 RTL8CO15255 209 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 OR7C2O60412 319 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 GAGE7O76087 117 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 NUDT3O95989 172 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 GAGE12FP0CL80 117 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 GAGE12GP0CL81 117 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 GAGE12IP0CL82 117 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 PET100P0DJ07 73 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 KCNIP2Q9NS61 270 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 PRELID1Q9Y255 219 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 HERC2O95714 4834 aa12.42□□□□□ -0.42
PNKP-230ENST00000638016 KIAA1109Q2LD37 5005 aa12.41□□□□□ -0.42
PNKP-230ENST00000638016 RNASE4P34096 147 aaKnown RBP12.41□□□□□ -0.42
PNKP-230ENST00000638016 CCDC28AQ8IWP9 274 aa12.41□□□□□ -0.42
PNKP-230ENST00000638016 ZFAND2AQ8N6M9 145 aa12.41□□□□□ -0.42
PNKP-230ENST00000638016 LINC00612Q8N6U2 182 aa12.41□□□□□ -0.42
PNKP-230ENST00000638016 PKHD1P08F94 4074 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 ZNF324O75467 553 aaPredicted RBP12.4□□□□□ -0.42
PNKP-230ENST00000638016 SLC25A5P05141 298 aaKnown RBP12.4□□□□□ -0.42
PNKP-230ENST00000638016 HOXA5P20719 270 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 RANP62826 216 aaKnown RBP12.4□□□□□ -0.42
PNKP-230ENST00000638016 UBE2L3P68036 154 aaKnown RBP12.4□□□□□ -0.42
PNKP-230ENST00000638016 C9orf47Q6ZRZ4 202 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 Q6ZTI0 123 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 C15orf53Q8NAA6 179 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 SCGB1C1Q8TD33 95 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 GSN-AS1Q9NRJ2 163 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 DNAH11Q96DT5 4516 aa12.4□□□□□ -0.42
PNKP-230ENST00000638016 IFNA5P01569 189 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 Q5BKY6 102 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 Q6ZR54 194 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 C11orf72Q8NBR9 251 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 LINC00477Q96M19 166 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 PYGO2Q9BRQ0 406 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 Q9H3A6 140 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 TP53TG3Q9ULZ0 132 aa12.39□□□□□ -0.43
PNKP-230ENST00000638016 A0A0J9YY99 117 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 SNURFLB1AK76 121 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 CRISP2P16562 243 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 RAB2AP61019 212 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 OR5I1Q13606 314 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 LGALS9BQ3B8N2 356 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 RNF212Q495C1 297 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 ZNF492Q9P255 531 aa12.38□□□□□ -0.43
PNKP-230ENST00000638016 A0A1B0GVY2 172 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 HMGB3O15347 200 aaKnown RBP12.37□□□□□ -0.43
PNKP-230ENST00000638016 PTTG1O95997 202 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 GPX1P07203 203 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 TMEM78Q5T7P6 136 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 TMPRSS5Q9H3S3 457 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 KLF12Q9Y4X4 402 aa12.37□□□□□ -0.43
PNKP-230ENST00000638016 PKD1P98161 4303 aa12.36□□□□□ -0.43
PNKP-230ENST00000638016 TRAV26-1A0A087WT03 109 aa12.36□□□□□ -0.43
PNKP-230ENST00000638016 KHDC3LQ587J8 217 aa12.36□□□□□ -0.43
PNKP-230ENST00000638016 ATG101Q9BSB4 218 aa12.36□□□□□ -0.43
PNKP-230ENST00000638016 MUC4Q99102 2169 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 PRSS29PA6NIE9 313 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 EIF4E3Q8N5X7 224 aaKnown RBP12.35□□□□□ -0.43
PNKP-230ENST00000638016 HYLS1Q96M11 299 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 MED28Q9H204 178 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 RPH3ALQ9UNE2 315 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 LINC00588Q9Y4M8 146 aa12.35□□□□□ -0.43
PNKP-230ENST00000638016 ZNF138P52744 262 aa12.34□□□□□ -0.43
PNKP-230ENST00000638016 DAZ2Q13117 558 aaKnown RBP12.34□□□□□ -0.43
PNKP-230ENST00000638016 LINC00336Q6ZUF6 198 aa12.34□□□□□ -0.43
PNKP-230ENST00000638016 HSD17B11Q8NBQ5 300 aa12.34□□□□□ -0.43
PNKP-230ENST00000638016 ZNRF2Q8NHG8 242 aa12.34□□□□□ -0.43
PNKP-230ENST00000638016 TRGV1A0A0A0MS02 117 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 DIRC3C9JPN6 131 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 M6PRP20645 277 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 TAS2R45P59539 299 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 ACOT6Q3I5F7 207 aaPredicted RBP12.33□□□□□ -0.44
PNKP-230ENST00000638016 ANXA2RQ3ZCQ2 193 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 MUC21Q5SSG8 566 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 GNPNAT1Q96EK6 184 aaPredicted RBP12.33□□□□□ -0.44
PNKP-230ENST00000638016 LINC00467Q9BRT7 94 aa12.33□□□□□ -0.44
PNKP-230ENST00000638016 IGHV1OR15-1A0A075B7D0 117 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 RGS13O14921 159 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 CSN1S1P47710 185 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 TCL1AP56279 114 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 GNG5P63218 68 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 ZNF680Q8NEM1 530 aa12.32□□□□□ -0.44
PNKP-230ENST00000638016 MRPL16Q9NX20 251 aaKnown RBP12.32□□□□□ -0.44
PNKP-230ENST00000638016 PGPA6NDG6 321 aa12.31□□□□□ -0.44
PNKP-230ENST00000638016 IGHV3-53P01767 116 aa12.31□□□□□ -0.44
PNKP-230ENST00000638016 NMBP08949 121 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms