RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZNF586Q9NXT0 402 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 TMEM14CQ9P0S9 112 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 INMT-MINDY4F8WBC2 141 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 PRB4P10163 310 aaPredicted RBP11.27□□□□□ -0.61
CLN3-264ENST00000637985 IFITM3Q01628 133 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 NHLH2Q02577 135 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 CLINT1Q14677 625 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 ICAM4Q14773 271 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 SYT8Q8NBV8 401 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 MRPL53Q96EL3 112 aaKnown RBP11.27□□□□□ -0.61
CLN3-264ENST00000637985 ODF3Q96PU9 254 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 NPCDR1Q9BY65 106 aa11.27□□□□□ -0.61
CLN3-264ENST00000637985 TIMM8BQ9Y5J9 83 aaPredicted RBP11.27□□□□□ -0.61
CLN3-264ENST00000637985 TRBV19A0A075B6N1 114 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 SIX6O95475 246 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 DEFB130BP0DP73 79 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 DEFB130AP0DP74 79 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 HIST1H1EP10412 219 aaKnown RBP11.26□□□□□ -0.61
CLN3-264ENST00000637985 HTN1P15515 57 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 PDE6HQ13956 83 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 OR5C1Q8NGR4 320 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 RNASE8Q8TDE3 154 aaKnown RBP11.26□□□□□ -0.61
CLN3-264ENST00000637985 TMEM263Q8WUH6 116 aaKnown RBP11.26□□□□□ -0.61
CLN3-264ENST00000637985 UPK3BQ9BT76 320 aa11.26□□□□□ -0.61
CLN3-264ENST00000637985 CBY3A6NI87 242 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 NPIPB6E9PJ23 425 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 LEPP41159 167 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 GFI1BQ5VTD9 330 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 MARVELD1Q9BSK0 173 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 PRELID1Q9Y255 219 aa11.25□□□□□ -0.61
CLN3-264ENST00000637985 ATP5G1P05496 136 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 CT45A10P0DMU9 189 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 ATP5G3P48201 142 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 LINC00315P59091 139 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 KIR3DS1Q14943 382 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 FCN2Q15485 313 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 LRRC37A5PQ49AS3 106 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 CCDC28AQ8IWP9 274 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 PARD6GQ9BYG4 376 aaPredicted RBP11.24□□□□□ -0.61
CLN3-264ENST00000637985 KCNIP2Q9NS61 270 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 OR5AC2Q9NZP5 309 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 TIMM9Q9Y5J7 89 aa11.24□□□□□ -0.61
CLN3-264ENST00000637985 H0YIZ8 118 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 EREGO14944 169 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 IFNA5P01569 189 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 DEFA1P59665 94 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 DEFA3P59666 94 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 THAP6Q8TBB0 222 aa11.23□□□□□ -0.61
CLN3-264ENST00000637985 NOP10Q9NPE3 64 aaKnown RBP11.23□□□□□ -0.61
CLN3-264ENST00000637985 NDUFB4O95168 129 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 PYYP10082 97 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 H2BFSP57053 126 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 GCSAMLQ5JQS6 135 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 LINC00477Q96M19 166 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 SLC25A2Q9BXI2 301 aa11.22□□□□□ -0.61
CLN3-264ENST00000637985 WDR61Q9GZS3 305 aaKnown RBP11.22□□□□□ -0.61
CLN3-264ENST00000637985 C17orf112F2Z3M2 114 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 M0R3E3 92 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 SLC25A5P05141 298 aaKnown RBP11.21□□□□□ -0.61
CLN3-264ENST00000637985 PET100P0DJ07 73 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 ERVFC1-1P60608 527 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 PPP1R1CQ8WVI7 109 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 PYGO2Q9BRQ0 406 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 MRPL32Q9BYC8 188 aaKnown RBP11.21□□□□□ -0.61
CLN3-264ENST00000637985 AAMDCQ9H7C9 122 aa11.21□□□□□ -0.61
CLN3-264ENST00000637985 LRP1Q07954 4544 aaKnown RBP11.2□□□□□ -0.62
CLN3-264ENST00000637985 TRAV12-3A0A0B4J271 114 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 SNURFLB1AK76 121 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 J3KRW8 73 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 SSNA1O43805 119 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 ESRGQ1W209 222 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 LINC00612Q8N6U2 182 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 BLNKQ8WV28 456 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 FAM167A-AS1Q96KT0 104 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 OR51M1Q9H341 326 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 PLA2G2DQ9UNK4 145 aa11.2□□□□□ -0.62
CLN3-264ENST00000637985 NBEAP1P0C6P0 100 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 HAMPP81172 84 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 ERCC8Q13216 396 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 C9orf47Q6ZRZ4 202 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 MIR17HGQ75NE6 70 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 EXOC3-AS1Q8N2X6 119 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 FAM19A4Q96LR4 140 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 ATP5SQ99766 215 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 FUT9Q9Y231 359 aa11.19□□□□□ -0.62
CLN3-264ENST00000637985 MRPS16Q9Y3D3 137 aaKnown RBP11.19□□□□□ -0.62
CLN3-264ENST00000637985 C7orf71A4D174 169 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 KLLNB2CW77 178 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 MPC2O95563 127 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 NMBP08949 121 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 DAZ2Q13117 558 aaKnown RBP11.18□□□□□ -0.62
CLN3-264ENST00000637985 PAXXQ9BUH6 204 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 AGPAT4-IT1Q9H0P7 198 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 BATF3Q9NR55 127 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 HSPB11Q9Y547 144 aa11.18□□□□□ -0.62
CLN3-264ENST00000637985 ZNF324O75467 553 aaPredicted RBP11.17□□□□□ -0.62
CLN3-264ENST00000637985 CRISP2P16562 243 aa11.17□□□□□ -0.62
CLN3-264ENST00000637985 ZNF680Q8NEM1 530 aa11.17□□□□□ -0.62
CLN3-264ENST00000637985 FXYD5Q96DB9 178 aa11.17□□□□□ -0.62
CLN3-264ENST00000637985 LINC00467Q9BRT7 94 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms