RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 VKORC1L1Q8N0U8 176 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-64DA0A0J9YX35 117 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 RBM3P98179 157 aaKnown RBP4.56□□□□□ -1.68
SCN1A-216ENST00000637968 SPTBN2O15020 2390 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 PATE4P0C8F1 98 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 CRYGSP22914 178 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 CXCL5P42830 114 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 Q86TA4 180 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 SBSPONQ8IVN8 264 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 C9orf85Q96MD7 179 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 FOXB1Q99853 325 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 NLRC5Q86WI3 1866 aa4.56□□□□□ -1.68
SCN1A-216ENST00000637968 IGLV3-1P01715 115 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 IGHG3P01860 377 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 PLPPR2Q96GM1 343 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 C16orf92Q96LL3 132 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 COL4A3Q01955 1670 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 TRAV12-2A0A075B6T6 113 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 SMIM26A0A096LP01 95 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 PATE3B3GLJ2 98 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF883P0CG24 379 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 HIST1H4AP62805 103 aaKnown RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 RSPO1Q2MKA7 263 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 ORMDL2Q53FV1 153 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 C10orf128Q5T292 105 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 IL17RELQ6ZVW7 336 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 PLEKHB2Q96CS7 222 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 RTTNQ86VV8 2226 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 TRAV12-3A0A0B4J271 114 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 IGLV3-21P80748 117 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 Q8N8P6 123 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF714Q96N38 554 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 FSCN3Q9NQT6 498 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 THSD7BQ9C0I4 1608 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 DIDO1Q9BTC0 2240 aaKnown RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 C15orf61A6NNL5 157 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 K7EM74 188 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 P0DMU3 169 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 FAM231AP0DMU4 169 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 FAM231CP0DMU5 169 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 DUTP33316 252 aaKnown RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 LYZP61626 148 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 MORN5Q5VZ52 161 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 NFAM1Q8NET5 270 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 NUP210Q8TEM1 1887 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-216ENST00000637968 METTL26Q96S19 204 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 PRSS22Q9GZN4 317 aa4.55□□□□□ -1.68
SCN1A-216ENST00000637968 SCN10AQ9Y5Y9 1956 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 IGHV3-15A0A0B4J1V0 119 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 C16orf97H3BN30 126 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 LAMTOR3Q9UHA4 124 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 SERP1Q9Y6X1 66 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 U3KQE9 123 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 KMT2EQ8IZD2 1858 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 TANC2Q9HCD6 1990 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 PRSS46E5RG02 174 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 UPK2O00526 184 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 RNASE2P10153 161 aaKnown RBP4.54□□□□□ -1.68
SCN1A-216ENST00000637968 UBE2D1P51668 147 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 RPL18AQ02543 176 aaKnown RBP4.54□□□□□ -1.68
SCN1A-216ENST00000637968 CD69Q07108 199 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 C20orf204Q6ZNR8 217 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 HHLA3Q9XRX5 114 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 A0A096LPE4 126 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 A0A1W2PPZ6 126 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 A0A1W2PR77 199 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 NDUFC2-KCTD14E9PQ53 114 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 INS-IGF2F8WCM5 200 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 CXCL13O43927 109 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 EFNA4P52798 201 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 TMEM86BQ8N661 226 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 ITLN1Q8WWA0 313 aa4.54□□□□□ -1.68
SCN1A-216ENST00000637968 C11orf68Q9H3H3 251 aaKnown RBP4.54□□□□□ -1.68
SCN1A-216ENST00000637968 C19orf71A6NCJ1 209 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 C12orf77C9JDV5 145 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF497Q6ZNH5 498 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 EXOC3-AS1Q8N2X6 119 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 SHANK2-AS3Q9BTD1 123 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 DEFB127Q9H1M4 99 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 UNC13CQ8NB66 2214 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 IGHG2P01859 326 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 LINC00336Q6ZUF6 198 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 MYCNOSP40205 109 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 PMAIP1Q13794 54 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 PRIMA1Q86XR5 153 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 RNF182Q8N6D2 247 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 DEFB108BQ8NET1 73 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 RPUSD1Q9UJJ7 312 aaKnown RBP4.53□□□□□ -1.68
SCN1A-216ENST00000637968 S100A7L2Q5SY68 101 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 SPANXN1Q5VSR9 72 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 Q8N7P7 452 aa4.53□□□□□ -1.68
SCN1A-216ENST00000637968 ZNF318Q5VUA4 2279 aa4.53□□□□□ -1.69
SCN1A-216ENST00000637968 TGFBR3LH3BV60 316 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 SPINK2P20155 84 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 FOXL2NBQ6ZUU3 175 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 ZNF71Q9NQZ8 489 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-216ENST00000637968 CRIP3Q6Q6R5 217 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 HES7Q9BYE0 225 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 ZMAT4Q9H898 229 aa4.52□□□□□ -1.69
SCN1A-216ENST00000637968 TRGV5A0A0B4J1U4 118 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms