RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 A0A1B0GXF2 115 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 J3QLI3 93 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 TMEM95Q3KNT9 176 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 LCN12Q6JVE5 192 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 C16orf54Q6UWD8 224 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 RNF182Q8N6D2 247 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 ARL6IP6Q8N6S5 226 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 VGLL1Q99990 258 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 A0A087X0K7 114 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 SERTM2A0A1B0GWG4 89 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 IGLC3P0DOY3 106 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 IGHV4-31P0DP07 118 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 PCP4P48539 62 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 Q5PR19 223 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 RBPMS2Q6ZRY4 209 aaKnown RBP12.03□□□□□ -0.48
CLN3-251ENST00000636853 ATP5L2Q7Z4Y8 100 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 Q8TAT8 98 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 GFRA4Q9GZZ7 299 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 NRN1Q9NPD7 142 aa12.03□□□□□ -0.48
CLN3-251ENST00000636853 SPATA45Q537H7 98 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 UNQ9165/PRO28630Q6UXU0 137 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 MRPS16Q9Y3D3 137 aaKnown RBP12.02□□□□□ -0.49
CLN3-251ENST00000636853 C20orf202A1L168 122 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 HBBP68871 147 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 ATP6V0BQ99437 205 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 BEX4Q9NWD9 120 aaPredicted RBP12.02□□□□□ -0.49
CLN3-251ENST00000636853 U3KQE9 123 aa12.02□□□□□ -0.49
CLN3-251ENST00000636853 PRAC2D3DTV9 90 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 H3BUA1 57 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 CT45A10P0DMU9 189 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 USMG5Q96IX5 58 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 RCHY1Q96PM5 261 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 LAMTOR2Q9Y2Q5 125 aa12.01□□□□□ -0.49
CLN3-251ENST00000636853 A0A1W2PS18 150 aa12□□□□□ -0.49
CLN3-251ENST00000636853 KRTDAPP60985 99 aa12□□□□□ -0.49
CLN3-251ENST00000636853 PRR25Q96S07 402 aa12□□□□□ -0.49
CLN3-251ENST00000636853 NBPF19A0A087WUL8 3843 aa12□□□□□ -0.49
CLN3-251ENST00000636853 NAV2Q8IVL1 2488 aa12□□□□□ -0.49
CLN3-251ENST00000636853 FAM231BA6NCW3 169 aa12□□□□□ -0.49
CLN3-251ENST00000636853 ZNF324O75467 553 aaPredicted RBP12□□□□□ -0.49
CLN3-251ENST00000636853 BRI3O95415 125 aa12□□□□□ -0.49
CLN3-251ENST00000636853 IGLV1-40P01703 118 aa12□□□□□ -0.49
CLN3-251ENST00000636853 AMTP48728 403 aa12□□□□□ -0.49
CLN3-251ENST00000636853 ERCC8Q13216 396 aa12□□□□□ -0.49
CLN3-251ENST00000636853 PMCHL1Q16048 86 aa12□□□□□ -0.49
CLN3-251ENST00000636853 BATFQ16520 125 aa12□□□□□ -0.49
CLN3-251ENST00000636853 OR4X2Q8NGF9 303 aa12□□□□□ -0.49
CLN3-251ENST00000636853 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.99□□□□□ -0.49
CLN3-251ENST00000636853 HNRNPA3P51991 378 aaKnown RBP11.99□□□□□ -0.49
CLN3-251ENST00000636853 CFHR3Q02985 330 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 Q96MF0 132 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 RNF114Q9Y508 228 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 SH2D1AO60880 128 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 SAPCD1Q5SSQ6 148 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 SLC50A1Q9BRV3 221 aa11.99□□□□□ -0.49
CLN3-251ENST00000636853 TMSB15BA0A087X1C1 80 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 TRAV8-2A0A0B4J237 113 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 K7EP13 123 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 SMAD7O15105 426 aaKnown RBP11.98□□□□□ -0.49
CLN3-251ENST00000636853 TCF21O43680 179 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 C8orf86Q6ZUL3 223 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 STPG4Q8N801 248 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 NDUFA4O00483 81 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 ZNF80P51504 273 aaPredicted RBP11.98□□□□□ -0.49
CLN3-251ENST00000636853 FOXA3P55318 350 aaPredicted RBP11.98□□□□□ -0.49
CLN3-251ENST00000636853 FAM162BQ5T6X4 162 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 HIST2H2BCQ6DN03 193 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 NIT1Q86X76 327 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 LRRC75A-AS1Q8N1F1 130 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 C18orf32Q8TCD1 76 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 TPPP3Q9BW30 176 aa11.98□□□□□ -0.49
CLN3-251ENST00000636853 ARMS2P0C7Q2 107 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 TFPI2P48307 235 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 C10orf99Q6UWK7 81 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 Q6ZN92 141 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 GLMPQ8WWB7 406 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 DOPEY2Q9Y3R5 2298 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 FSHBP01225 129 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 C3orf79P0CE67 100 aa11.97□□□□□ -0.49
CLN3-251ENST00000636853 ALKBH7Q9BT30 221 aaPredicted RBP11.97□□□□□ -0.49
CLN3-251ENST00000636853 ZNF469Q96JG9 3925 aaPredicted RBP11.96□□□□□ -0.49
CLN3-251ENST00000636853 A0A0G2JLM5 398 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 TMEM189A5PLL7 270 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 FBLL1A6NHQ2 334 aaKnown RBP11.96□□□□□ -0.49
CLN3-251ENST00000636853 HAX1O00165 279 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 UBE2V1Q13404 147 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 COX8CQ7Z4L0 72 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 KRTAP1-3Q8IUG1 177 aa11.96□□□□□ -0.49
CLN3-251ENST00000636853 APCP25054 2843 aa11.96□□□□□ -0.5
CLN3-251ENST00000636853 A0A1B0GUT8 65 aa11.95□□□□□ -0.5
CLN3-251ENST00000636853 BORCS7Q96B45 105 aa11.95□□□□□ -0.5
CLN3-251ENST00000636853 TSPOP30536 169 aa11.95□□□□□ -0.5
CLN3-251ENST00000636853 NPFFR1Q9GZQ6 430 aa11.95□□□□□ -0.5
CLN3-251ENST00000636853 PMCHP20382 165 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 PTTG1IPP53801 180 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 KLF5Q13887 457 aaPredicted RBP11.94□□□□□ -0.5
CLN3-251ENST00000636853 Q6YL49 198 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 IL17RELQ6ZVW7 336 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 ZNF738Q8NE65 137 aa11.94□□□□□ -0.5
CLN3-251ENST00000636853 C16orf92Q96LL3 132 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms