RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FHL2Q14192 279 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 TMEM268Q5VZI3 342 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 CIRBP-AS1Q8TBR5 109 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 DAZAP1Q96EP5 407 aaKnown RBP9.6□□□□□ -0.87
CLN3-249ENST00000636685 PYGO2Q9BRQ0 406 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 KRTAP9-2Q9BYQ4 174 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 KLF12Q9Y4X4 402 aa9.6□□□□□ -0.87
CLN3-249ENST00000636685 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.59□□□□□ -0.87
CLN3-249ENST00000636685 TRAV5A0A0B4J249 113 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 A0A0B4J2A0 478 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 TEX13DA0A0J9YY54 714 aaPredicted RBP9.59□□□□□ -0.87
CLN3-249ENST00000636685 PRAC2D3DTV9 90 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 E5RGE8 158 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 K7EQD1 137 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 L7N2F9 121 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 GOSR2O14653 212 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 SPINK4O60575 86 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 TSC22D2O75157 780 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 IGLV2-8P01709 118 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 RPL7P18124 248 aaKnown RBP9.59□□□□□ -0.87
CLN3-249ENST00000636685 OPCMLQ14982 345 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 TEX261Q6UWH6 196 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 BPIFCQ8NFQ6 507 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 DNAJC4Q9NNZ3 241 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 SHPKQ9UHJ6 478 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 GPR132Q9UNW8 380 aa9.59□□□□□ -0.87
CLN3-249ENST00000636685 A0A087X0K7 114 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 C9orf170A2RU37 121 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 IBA57-AS1B1ANH7 110 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 LECT2O14960 151 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 SLAQ13239 276 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 SURF2Q15527 256 aaPredicted RBP9.58□□□□□ -0.88
CLN3-249ENST00000636685 ZNF680Q8NEM1 530 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 MARCH1Q8TCQ1 289 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 MITD1Q8WV92 249 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 SHANK2-AS3Q9BTD1 123 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 MRPL16Q9NX20 251 aaKnown RBP9.58□□□□□ -0.88
CLN3-249ENST00000636685 HSPB7Q9UBY9 170 aa9.58□□□□□ -0.88
CLN3-249ENST00000636685 G3V3Q6 166 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 GYPEP15421 78 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 S100A7P31151 101 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 RPL37AP61513 92 aaKnown RBP9.57□□□□□ -0.88
CLN3-249ENST00000636685 CYCSP99999 105 aaKnown RBP9.57□□□□□ -0.88
CLN3-249ENST00000636685 TMEM128Q5BJH2 165 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 NAA60Q9H7X0 242 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 CACFD1Q9UGQ2 172 aa9.57□□□□□ -0.88
CLN3-249ENST00000636685 IGHV3-38A0A0C4DH36 116 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 A0A0D9SG52 128 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 SIX6O95475 246 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 SNRPCP09234 159 aaKnown RBP9.56□□□□□ -0.88
CLN3-249ENST00000636685 CT45A10P0DMU9 189 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 S100A11P31949 105 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 ATP5IP56385 69 aaPredicted RBP9.56□□□□□ -0.88
CLN3-249ENST00000636685 H2BFSP57053 126 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 RAB14P61106 215 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 OR1S1Q8NH92 325 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 MRPL32Q9BYC8 188 aaKnown RBP9.56□□□□□ -0.88
CLN3-249ENST00000636685 PRR13Q9NZ81 148 aa9.56□□□□□ -0.88
CLN3-249ENST00000636685 LINC00862A6NCI5 91 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 SFT2D2O95562 160 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 AKR1C4P17516 323 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 LEPP41159 167 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 TCL1AP56279 114 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 PPP1R1AQ13522 171 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 TEPPQ6URK8 271 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 TMUB2Q71RG4 321 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 VGLL1Q99990 258 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 RTBDNQ9BSG5 229 aaPredicted RBP9.55□□□□□ -0.88
CLN3-249ENST00000636685 HIGD1AQ9Y241 93 aa9.55□□□□□ -0.88
CLN3-249ENST00000636685 TRGV4A0A0C4DH28 118 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 GAS8-AS1O95177 125 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 CXCL2P19875 107 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 RAB11AP62491 216 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 LINC01556Q5JQF7 62 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 CLLU1Q5K131 121 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 ZNF546Q86UE3 836 aa9.54□□□□□ -0.88
CLN3-249ENST00000636685 PCNPQ8WW12 178 aaKnown RBP9.54□□□□□ -0.88
CLN3-249ENST00000636685 ZNF331Q9NQX6 463 aaPredicted RBP9.54□□□□□ -0.88
CLN3-249ENST00000636685 C14orf166Q9Y224 244 aaKnown RBP9.54□□□□□ -0.88
CLN3-249ENST00000636685 FXYD6-FXYD2A0A087WZ82 144 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 PMS2P5A8MQ11 134 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 MRPS12O15235 138 aaKnown RBP9.53□□□□□ -0.88
CLN3-249ENST00000636685 IAPPP10997 89 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 VAMP1P23763 118 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 SMCO1Q147U7 214 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 ANXA2RQ3ZCQ2 193 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 EIF4E3Q8N5X7 224 aaKnown RBP9.53□□□□□ -0.88
CLN3-249ENST00000636685 THAP6Q8TBB0 222 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 BLNKQ8WV28 456 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 NMES1Q9C002 83 aa9.53□□□□□ -0.88
CLN3-249ENST00000636685 CRYM-AS1A6NIL9 109 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 HYPMO75409 117 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 MPC2O95563 127 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 IGHV3-30P01768 117 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 IGHV3-33P01772 117 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 OR5G3P0C626 314 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 SFTA3P0C7M3 94 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 IGHV3-30-3P0DP02 117 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 IGHV3-30-5P0DP03 117 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 ACOT6Q3I5F7 207 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms