RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FAM3BP58499 235 aaPredicted RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 DEFB136Q30KP8 78 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 Q6AWC8 147 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 ZNF738Q8NE65 137 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 OR10J6PQ8NGY7 276 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 RAX2Q96IS3 184 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 ODF3Q96PU9 254 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 PRR25Q96S07 402 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 CITED2Q99967 270 aaPredicted RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 RPP21Q9H633 154 aaKnown RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 AURKAIP1Q9NWT8 199 aaPredicted RBP7.99□□□□□ -1.13
CLN3-248ENST00000636355 URGCP-MRPS24S4R325 110 aa7.99□□□□□ -1.13
CLN3-248ENST00000636355 SMIM27A0A1W2PRY6 76 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 XKRY2A2RUG3 117 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 ZNF705GA8MUZ8 300 aaPredicted RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 A8MWL6 223 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 K7EQG2 157 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 GATCO43716 136 aaKnown RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 ZNF138P52744 262 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 RPL11P62913 178 aaKnown RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 SRSF2Q01130 221 aaKnown RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 OR5I1Q13606 314 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 SMUG1Q53HV7 270 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 FAM162BQ5T6X4 162 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 RASL11AQ6T310 242 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 C18orf65Q6ZTR6 163 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 RNF182Q8N6D2 247 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 NHLRC2Q8NBF2 726 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 TSKUQ8WUA8 353 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 DAZAP1Q96EP5 407 aaKnown RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 FAM210BQ96KR6 192 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 LINC00477Q96M19 166 aa7.98□□□□□ -1.13
CLN3-248ENST00000636355 RNASE7Q9H1E1 156 aaKnown RBP7.98□□□□□ -1.13
CLN3-248ENST00000636355 A0A1W2PPQ1 181 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 MT-ND6P03923 174 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 PRR27Q6MZM9 219 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 Q71RC1 249 aaPredicted RBP7.97□□□□□ -1.13
CLN3-248ENST00000636355 ATP5L2Q7Z4Y8 100 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 NUDT10Q8NFP7 164 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 OR2K2Q8NGT1 345 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 DYNLRB2Q8TF09 96 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 DLX4Q92988 240 aaPredicted RBP7.97□□□□□ -1.13
CLN3-248ENST00000636355 NUDT11Q96G61 164 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 ZC2HC1AQ96GY0 325 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 SPAG8Q99932 426 aaPredicted RBP7.97□□□□□ -1.13
CLN3-248ENST00000636355 MS4A6AQ9H2W1 248 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 SRD5A3Q9H8P0 318 aa7.97□□□□□ -1.13
CLN3-248ENST00000636355 TGIF2-C20orf24A0A0A6YYL0 155 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 ADARB2-AS1A8MUL3 147 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 C1orf196B1AJZ1 125 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 CSN3P07498 182 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 CXCL1P09341 107 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 HLA-DMBP28068 263 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 RPS20P60866 119 aaKnown RBP7.96□□□□□ -1.14
CLN3-248ENST00000636355 RAB5BP61020 215 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 OR8A1Q8NGG7 326 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 ASCL2Q99929 193 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 VGLL1Q99990 258 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 NAT8BQ9UHF3 227 aa7.96□□□□□ -1.14
CLN3-248ENST00000636355 OR4C46A6NHA9 309 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 ZNF705FA8MVS1 300 aaPredicted RBP7.95□□□□□ -1.14
CLN3-248ENST00000636355 PRAC2D3DTV9 90 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 HAX1O00165 279 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 CRISP2P16562 243 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 HIST1H1AQ02539 215 aaPredicted RBP7.95□□□□□ -1.14
CLN3-248ENST00000636355 WDR73Q6P4I2 378 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 ADAMTSL5Q6ZMM2 481 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 FOXI2Q6ZQN5 318 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 APRG1Q8IVJ8 170 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 Q8TAT8 98 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 C20orf173Q96LM9 149 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 MDFIQ99750 246 aa7.95□□□□□ -1.14
CLN3-248ENST00000636355 A0A1B0GW15 77 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 IZUMO1RA6ND01 250 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 RPS10P46783 165 aaKnown RBP7.94□□□□□ -1.14
CLN3-248ENST00000636355 FOXA3P55318 350 aaPredicted RBP7.94□□□□□ -1.14
CLN3-248ENST00000636355 LINC01559Q495D7 138 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 IGFL4Q6B9Z1 124 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 RBPMS2Q6ZRY4 209 aaKnown RBP7.94□□□□□ -1.14
CLN3-248ENST00000636355 SPATA3Q8NHX4 192 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 FAM19A4Q96LR4 140 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 SGK494Q96LW2 274 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 FAM110AQ9BQ89 295 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 GPR61Q9BZJ8 451 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 AGPAT4-IT1Q9H0P7 198 aa7.94□□□□□ -1.14
CLN3-248ENST00000636355 TMA7Q9Y2S6 64 aaKnown RBP7.94□□□□□ -1.14
CLN3-248ENST00000636355 A0A1W2PRX2 142 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 A8MTW9 85 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 FABP5P3A8MUU1 101 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 HIGD1CA8MV81 97 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 SH2D1AO60880 128 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 DUSP14O95147 198 aaKnown RBP7.93□□□□□ -1.14
CLN3-248ENST00000636355 EDN2P20800 178 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 DEFB114Q30KQ6 69 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 EBLN2Q6P2I7 272 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 TMEM61Q8N0U2 210 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 OR2D3Q8NGH3 330 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 C8orf49Q96NF6 230 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 CLUHP3Q96NS8 147 aa7.93□□□□□ -1.14
CLN3-248ENST00000636355 NEU1Q99519 415 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms