RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TSPOP30536 169 aa13.14□□□□□ -0.31
CLN3-243ENST00000635973 FHITP49789 147 aa13.14□□□□□ -0.31
CLN3-243ENST00000635973 FGF8P55075 233 aaPredicted RBP13.14□□□□□ -0.31
CLN3-243ENST00000635973 CEMP1Q6PRD7 247 aaPredicted RBP13.14□□□□□ -0.31
CLN3-243ENST00000635973 RXFP4Q8TDU9 374 aa13.14□□□□□ -0.31
CLN3-243ENST00000635973 IGF2BP2-AS1Q96M15 143 aa13.14□□□□□ -0.31
CLN3-243ENST00000635973 TMEM208Q9BTX3 173 aa13.14□□□□□ -0.31
CLN3-243ENST00000635973 TRAV12-2A0A075B6T6 113 aa13.13□□□□□ -0.31
CLN3-243ENST00000635973 CDKN1BP46527 198 aa13.13□□□□□ -0.31
CLN3-243ENST00000635973 ERCC8Q13216 396 aa13.13□□□□□ -0.31
CLN3-243ENST00000635973 TMEM78Q5T7P6 136 aa13.13□□□□□ -0.31
CLN3-243ENST00000635973 LINC00476Q8WZB0 136 aa13.13□□□□□ -0.31
CLN3-243ENST00000635973 PLECQ15149 4684 aaKnown RBP13.13□□□□□ -0.31
CLN3-243ENST00000635973 ZNF705EA8MWA4 302 aaPredicted RBP13.12□□□□□ -0.31
CLN3-243ENST00000635973 J3KRW8 73 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 SLC25A5P05141 298 aaKnown RBP13.12□□□□□ -0.31
CLN3-243ENST00000635973 MIFP14174 115 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 LEPP41159 167 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 NKX2-5P52952 324 aaPredicted RBP13.12□□□□□ -0.31
CLN3-243ENST00000635973 DPPA3Q6W0C5 159 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 LINC00477Q96M19 166 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 ODF3Q96PU9 254 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 PLA2G2EQ9NZK7 142 aa13.12□□□□□ -0.31
CLN3-243ENST00000635973 CT45A10P0DMU9 189 aa13.11□□□□□ -0.31
CLN3-243ENST00000635973 SUN5Q8TC36 379 aa13.11□□□□□ -0.31
CLN3-243ENST00000635973 SFT2D1Q8WV19 159 aa13.11□□□□□ -0.31
CLN3-243ENST00000635973 TMPRSS5Q9H3S3 457 aa13.11□□□□□ -0.31
CLN3-243ENST00000635973 X6R8D5 127 aa13.11□□□□□ -0.31
CLN3-243ENST00000635973 A0A1B0GV50 99 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 DIRC3C9JPN6 131 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 UBE2G2P60604 165 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 ZNF705AQ6ZN79 300 aaPredicted RBP13.1□□□□□ -0.31
CLN3-243ENST00000635973 C9orf47Q6ZRZ4 202 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 VGLL1Q99990 258 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 AGPAT4-IT1Q9H0P7 198 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 ALMS1Q8TCU4 4167 aa13.1□□□□□ -0.31
CLN3-243ENST00000635973 IGHV4-28A0A0C4DH34 117 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 RBAKDNA6NC62 111 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 DEFB4AO15263 64 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 CRXO43186 299 aaPredicted RBP13.09□□□□□ -0.31
CLN3-243ENST00000635973 HBE1P02100 147 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 H2AFB1P0C5Y9 115 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 RAB5CP51148 216 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 GNG5P63218 68 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 GOLT1AQ6ZVE7 132 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 C1orf158Q8N1D5 194 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 Q8NAQ8 132 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 C5orf17Q8NAS9 161 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 C11orf45Q8TAV5 145 aa13.09□□□□□ -0.31
CLN3-243ENST00000635973 PHLDA1Q8WV24 401 aaPredicted RBP13.09□□□□□ -0.31
CLN3-243ENST00000635973 C11orf68Q9H3H3 251 aaKnown RBP13.09□□□□□ -0.31
CLN3-243ENST00000635973 A0A1W2PRE2 83 aa13.08□□□□□ -0.32
CLN3-243ENST00000635973 ZNF138P52744 262 aa13.08□□□□□ -0.32
CLN3-243ENST00000635973 SUMO1P63165 101 aaKnown RBP13.08□□□□□ -0.32
CLN3-243ENST00000635973 Q8TAT8 98 aa13.08□□□□□ -0.32
CLN3-243ENST00000635973 GGTLC3B5MD39 225 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 K7EQM0 130 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 IFNA7P01567 189 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 GFI1BQ5VTD9 330 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 TMEM256Q8N2U0 113 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 MBD3L1Q8WWY6 194 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 LINC01587Q99440 93 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 NEU1Q99519 415 aa13.07□□□□□ -0.32
CLN3-243ENST00000635973 YTHDF2Q9Y5A9 579 aaKnown RBP13.07□□□□□ -0.32
CLN3-243ENST00000635973 SMIM9A6NGZ8 99 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 SULT1A2P50226 295 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 KIR3DS1Q14943 382 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 RRN3P1Q2M238 152 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 ARL6IP6Q8N6S5 226 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 NIPSNAP3BQ9BS92 247 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 ZNF492Q9P255 531 aa13.06□□□□□ -0.32
CLN3-243ENST00000635973 SERTM2A0A1B0GWG4 89 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 FAM74A7A6NL05 159 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 TEX46H3BTG2 121 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 GPX1P07203 203 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 RBMY1A1P0DJD3 496 aaKnown RBP13.05□□□□□ -0.32
CLN3-243ENST00000635973 RBMY1CP0DJD4 496 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 HTN1P15515 57 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 EMP1P54849 157 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 RBMY1FQ15415 496 aaKnown RBP13.05□□□□□ -0.32
CLN3-243ENST00000635973 CST9LP1Q5W188 147 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 C20orf144Q9BQM9 153 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 NKX6-2Q9C056 277 aaPredicted RBP13.05□□□□□ -0.32
CLN3-243ENST00000635973 BOLA1Q9Y3E2 137 aa13.05□□□□□ -0.32
CLN3-243ENST00000635973 TRAV12-3A0A0B4J271 114 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 LOC102723971A0A1B0GUV8 181 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 C7orf71A4D174 169 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 H7BYZ3 331 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 TCRAP04437 139 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 RNASE4P34096 147 aaKnown RBP13.04□□□□□ -0.32
CLN3-243ENST00000635973 NANOS2P60321 138 aaKnown RBP13.04□□□□□ -0.32
CLN3-243ENST00000635973 BTN1A1Q13410 526 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 CYB561D1Q8N8Q1 229 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 FAM19A4Q96LR4 140 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 EPDR1Q9UM22 224 aa13.04□□□□□ -0.32
CLN3-243ENST00000635973 TRAV8-1A0A0A6YYK1 113 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 TRBV7-9A0A0J9YWB2 115 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 TMEM189A5PLL7 270 aa13.03□□□□□ -0.32
CLN3-243ENST00000635973 ZNF705GA8MUZ8 300 aaPredicted RBP13.03□□□□□ -0.32
CLN3-243ENST00000635973 KLLNB2CW77 178 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms