RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 GATD1Q8NB37 220 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 OR10J6PQ8NGY7 276 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 VGLL1Q99990 258 aa12.48□□□□□ -0.41
LDB3-208ENST00000623007 NAV2Q8IVL1 2488 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 IFITM10A6NMD0 228 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 M0QZ24 198 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 OR10D4PQ8NGN7 298 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 PGLYRP4Q96LB8 373 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 C8orf49Q96NF6 230 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 UTP20O75691 2785 aaKnown RBP12.47□□□□□ -0.41
LDB3-208ENST00000623007 PTPN13Q12923 2485 aa12.47□□□□□ -0.41
LDB3-208ENST00000623007 IGHV3OR16-13A0A075B7E8 117 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 IGHV3-49A0A0A0MS15 119 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 IGHV3-74A0A0B4J1X5 117 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 ZNF705FA8MVS1 300 aaPredicted RBP12.46□□□□□ -0.41
LDB3-208ENST00000623007 SOCS3O14543 225 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 SMAD7O15105 426 aaKnown RBP12.46□□□□□ -0.41
LDB3-208ENST00000623007 RPLP1P05386 114 aaKnown RBP12.46□□□□□ -0.41
LDB3-208ENST00000623007 CRIP1P50238 77 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 ZNF738Q8NE65 137 aa12.46□□□□□ -0.41
LDB3-208ENST00000623007 F2Z2F3 143 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 GFI1BQ5VTD9 330 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 IL17RELQ6ZVW7 336 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 AMBPP02760 352 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 CAMPP49913 170 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 RPL11P62913 178 aaKnown RBP12.45□□□□□ -0.42
LDB3-208ENST00000623007 KLF5Q13887 457 aaPredicted RBP12.45□□□□□ -0.42
LDB3-208ENST00000623007 LINC01559Q495D7 138 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 PDZD11Q5EBL8 140 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 RNF182Q8N6D2 247 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 AGPAT4-IT1Q9H0P7 198 aa12.45□□□□□ -0.42
LDB3-208ENST00000623007 FBN2P35556 2912 aa12.44□□□□□ -0.42
LDB3-208ENST00000623007 HLA-DMBP28068 263 aa12.44□□□□□ -0.42
LDB3-208ENST00000623007 SRIP30626 198 aa12.44□□□□□ -0.42
LDB3-208ENST00000623007 KLHDC1Q8N7A1 406 aa12.44□□□□□ -0.42
LDB3-208ENST00000623007 TM4SF20Q53R12 229 aa12.43□□□□□ -0.42
LDB3-208ENST00000623007 IGFL4Q6B9Z1 124 aa12.43□□□□□ -0.42
LDB3-208ENST00000623007 LCNL1Q6ZST4 164 aa12.43□□□□□ -0.42
LDB3-208ENST00000623007 C4orf3Q8WVX3 66 aa12.43□□□□□ -0.42
LDB3-208ENST00000623007 PEMTQ9UBM1 199 aa12.43□□□□□ -0.42
LDB3-208ENST00000623007 CTRLP40313 264 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 SLAQ13239 276 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 CSPG4Q6UVK1 2322 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 ZNF493Q6ZR52 646 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 Q8TAT8 98 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 YAE1D1Q9NRH1 226 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 GRIFINA4D1Z8 144 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 PRAC2D3DTV9 90 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 JOSD1Q15040 202 aaPredicted RBP12.42□□□□□ -0.42
LDB3-208ENST00000623007 FER1L6-AS1Q8NA97 138 aa12.42□□□□□ -0.42
LDB3-208ENST00000623007 DOPEY2Q9Y3R5 2298 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 CREBBPQ92793 2442 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 TMEM213A2RRL7 107 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 DNAJC9-AS1A6NH13 148 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 ORM1P02763 201 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 FRMD6-AS1P0C7T7 363 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 SNRPD3P62318 126 aaKnown RBP12.41□□□□□ -0.42
LDB3-208ENST00000623007 ZNF418Q8TF45 676 aaPredicted RBP12.41□□□□□ -0.42
LDB3-208ENST00000623007 JMJD8Q96S16 334 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 ALKBH7Q9BT30 221 aaPredicted RBP12.41□□□□□ -0.42
LDB3-208ENST00000623007 CNFNQ9BYD5 112 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 NIT2Q9NQR4 276 aa12.41□□□□□ -0.42
LDB3-208ENST00000623007 MAST4O15021 2626 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 HOXD3P31249 432 aaPredicted RBP12.4□□□□□ -0.42
LDB3-208ENST00000623007 ERCC8Q13216 396 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 HIST2H2BCQ6DN03 193 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 KCNS1Q96KK3 526 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 ODF3Q96PU9 254 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 SAMD10Q9BYL1 202 aa12.4□□□□□ -0.42
LDB3-208ENST00000623007 CRYBG3Q68DQ2 2970 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 LOC102724200A0A096LPH7 203 aaPredicted RBP12.39□□□□□ -0.43
LDB3-208ENST00000623007 TRAV2A0A0B4J234 112 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 LINC01619G3V211 115 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 SERF1AO75920 110 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 RNASE1P07998 156 aaKnown RBP12.39□□□□□ -0.43
LDB3-208ENST00000623007 IGLC6P0CF74 106 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 RAB4AP20338 218 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 KRTAP1-1Q07627 177 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 OR8A1Q8NGG7 326 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 C18orf32Q8TCD1 76 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 DPF1Q92782 380 aa12.39□□□□□ -0.43
LDB3-208ENST00000623007 TRAV21A0A0B4J279 112 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 GZMBP10144 247 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 IQCJQ1A5X6 159 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 PYY3Q5JQD4 70 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 GDF5OSQ5U4N7 250 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 TMEM256Q8N2U0 113 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 IGHV4OR15-8A0A075B7B6 117 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 A0A087WW49 117 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 FAM181BA6NEQ2 426 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 GPX1P07203 203 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 ARMS2P0C7Q2 107 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 ZNF80P51504 273 aaPredicted RBP12.38□□□□□ -0.43
LDB3-208ENST00000623007 KIAA1644Q3SXP7 199 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 C10orf99Q6UWK7 81 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 LYZL1Q6UWQ5 148 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 Q6ZSV7 163 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 DCANP1Q8TF63 244 aa12.38□□□□□ -0.43
LDB3-208ENST00000623007 CHCHD1Q96BP2 118 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms