RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ATP6V0CP27449 155 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 DAD1P61803 113 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 RANP62826 216 aaKnown RBP11.38□□□□□ -0.59
BRCA1-228ENST00000618469 LGALS9CQ6DKI2 356 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 OR10G4Q8NGN3 311 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 OR10G9Q8NGN4 311 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 OR10G7Q8NGN6 311 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 PSMG3Q9BT73 122 aaPredicted RBP11.38□□□□□ -0.59
BRCA1-228ENST00000618469 Q9H3A6 140 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 APLNQ9ULZ1 77 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 TNFSF18Q9UNG2 199 aa11.38□□□□□ -0.59
BRCA1-228ENST00000618469 TRAV12-3A0A0B4J271 114 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 PLAC8L1A1L4L8 177 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 G3V3Q6 166 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 HMGB3O15347 200 aaKnown RBP11.37□□□□□ -0.59
BRCA1-228ENST00000618469 CDC34P49427 236 aaPredicted RBP11.37□□□□□ -0.59
BRCA1-228ENST00000618469 TMEM78Q5T7P6 136 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 OR2G3Q8NGZ4 309 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 AGPAT4-IT1Q9H0P7 198 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 SH3BGRL3Q9H299 93 aa11.37□□□□□ -0.59
BRCA1-228ENST00000618469 LYRM9A8MSI8 78 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 CSN1S1P47710 185 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 RPL7L1Q6DKI1 246 aaKnown RBP11.36□□□□□ -0.59
BRCA1-228ENST00000618469 PQLC2Q6ZP29 291 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 C9orf47Q6ZRZ4 202 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 Q8TAT8 98 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 RNASE8Q8TDE3 154 aaKnown RBP11.36□□□□□ -0.59
BRCA1-228ENST00000618469 TMEM263Q8WUH6 116 aaKnown RBP11.36□□□□□ -0.59
BRCA1-228ENST00000618469 LINC00477Q96M19 166 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 VGLL1Q99990 258 aa11.36□□□□□ -0.59
BRCA1-228ENST00000618469 BORCS7-ASMTA0A0B4J1R7 106 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 C7orf71A4D174 169 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 ARPC5O15511 151 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 SLC25A5P05141 298 aaKnown RBP11.35□□□□□ -0.59
BRCA1-228ENST00000618469 ARL14EPLP0DKL9 152 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 BTN1A1Q13410 526 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 LYPD1Q8N2G4 141 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 NDUFAF3Q9BU61 184 aa11.35□□□□□ -0.59
BRCA1-228ENST00000618469 KLLNB2CW77 178 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 SMLR1H3BR10 107 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 DEFB130BP0DP73 79 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 DEFB130AP0DP74 79 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 ZNF493Q6ZR52 646 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 CCDC28AQ8IWP9 274 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 FAM19A4Q96LR4 140 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 OTORQ9NRC9 128 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 RPH3ALQ9UNE2 315 aa11.34□□□□□ -0.59
BRCA1-228ENST00000618469 MBP02144 154 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 GPX1P07203 203 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 CRISP2P16562 243 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 SERF2P84101 59 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 CD300CQ08708 224 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 PRR9Q5T870 116 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 HYLS1Q96M11 299 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 PYGO2Q9BRQ0 406 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 ZNF492Q9P255 531 aa11.33□□□□□ -0.6
BRCA1-228ENST00000618469 TIMM8BQ9Y5J9 83 aaPredicted RBP11.33□□□□□ -0.6
BRCA1-228ENST00000618469 VPS13DQ5THJ4 4388 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 DIRC3C9JPN6 131 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 STAG3L2P0CL84 134 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 STAG3L3P0CL85 134 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 RNASE4P34096 147 aaKnown RBP11.32□□□□□ -0.6
BRCA1-228ENST00000618469 ZNF138P52744 262 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 FAM74A1Q5RGS3 127 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 ZFAND2AQ8N6M9 145 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 CMTM2Q8TAZ6 248 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 RAB24Q969Q5 203 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 GNPNAT1Q96EK6 184 aaPredicted RBP11.32□□□□□ -0.6
BRCA1-228ENST00000618469 NOP10Q9NPE3 64 aaKnown RBP11.32□□□□□ -0.6
BRCA1-228ENST00000618469 MUC4Q99102 2169 aa11.32□□□□□ -0.6
BRCA1-228ENST00000618469 RBAKDNA6NC62 111 aa11.31□□□□□ -0.6
BRCA1-228ENST00000618469 PGPA6NDG6 321 aa11.31□□□□□ -0.6
BRCA1-228ENST00000618469 SNURFLB1AK76 121 aa11.31□□□□□ -0.6
BRCA1-228ENST00000618469 RXFP4Q8TDU9 374 aa11.31□□□□□ -0.6
BRCA1-228ENST00000618469 NMBP08949 121 aa11.3□□□□□ -0.6
BRCA1-228ENST00000618469 GCHFRP30047 84 aa11.3□□□□□ -0.6
BRCA1-228ENST00000618469 TMEM88Q6PEY1 159 aa11.3□□□□□ -0.6
BRCA1-228ENST00000618469 SSX7Q7RTT5 188 aa11.3□□□□□ -0.6
BRCA1-228ENST00000618469 ACTR3CQ9C0K3 210 aaPredicted RBP11.3□□□□□ -0.6
BRCA1-228ENST00000618469 BOLA1Q9Y3E2 137 aa11.3□□□□□ -0.6
BRCA1-228ENST00000618469 TRBV7-9A0A0J9YWB2 115 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 CBY3A6NI87 242 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 TAAR5O14804 337 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 ZNF324O75467 553 aaPredicted RBP11.29□□□□□ -0.6
BRCA1-228ENST00000618469 ATP5G1P05496 136 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 ATP5G3P48201 142 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 GNG5P63218 68 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 GOLT1AQ6ZVE7 132 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 IQCF2Q8IXL9 164 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 ZNF680Q8NEM1 530 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 FAM210BQ96KR6 192 aa11.29□□□□□ -0.6
BRCA1-228ENST00000618469 F5H768 121 aa11.28□□□□□ -0.6
BRCA1-228ENST00000618469 RGS13O14921 159 aa11.28□□□□□ -0.6
BRCA1-228ENST00000618469 CXorf1O96002 111 aa11.28□□□□□ -0.6
BRCA1-228ENST00000618469 AKR1C8PQ5T2L2 129 aa11.28□□□□□ -0.6
BRCA1-228ENST00000618469 Q6ZQT7 251 aa11.28□□□□□ -0.6
BRCA1-228ENST00000618469 EIF4E3Q8N5X7 224 aaKnown RBP11.28□□□□□ -0.6
BRCA1-228ENST00000618469 P0DMU3 169 aa11.27□□□□□ -0.61
BRCA1-228ENST00000618469 FAM231AP0DMU4 169 aa11.27□□□□□ -0.61
BRCA1-228ENST00000618469 FAM231CP0DMU5 169 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms