RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 OR5A1Q8NGJ0 315 aa10.4□□□□□ -0.75
MSH6-214ENST00000616033 IGF2RP11717 2491 aa10.4□□□□□ -0.75
MSH6-214ENST00000616033 COL25A1Q9BXS0 654 aaPredicted RBP10.39□□□□□ -0.75
MSH6-214ENST00000616033 NPIPB6E9PJ23 425 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 SH2D1AO60880 128 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 NDUFA3O95167 84 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 CHAC1Q9BUX1 264 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 HIF1ANQ9NWT6 349 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 DKK4Q9UBT3 224 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 SPTBN4Q9H254 2564 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 ATP5IP56385 69 aaPredicted RBP10.39□□□□□ -0.75
MSH6-214ENST00000616033 TRGV9Q99603 122 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 AAMDCQ9H7C9 122 aa10.39□□□□□ -0.75
MSH6-214ENST00000616033 IGHV3-49A0A0A0MS15 119 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 LOC107984156A0A0G2JMH3 177 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 FCN3O75636 299 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 APOMO95445 188 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 FAM104BQ5XKR9 115 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 ARL17AQ8IVW1 177 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 ABHD17AQ96GS6 310 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 SCNM1Q9BWG6 230 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 SMPXQ9UHP9 88 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 TRAV40A0A0B4J280 105 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 VGLL1Q99990 258 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 SEM1Q6ZVN7 128 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 OR4X2Q8NGF9 303 aa10.38□□□□□ -0.75
MSH6-214ENST00000616033 TRAV26-2A0A0B4J265 109 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 C1orf162Q8NEQ5 155 aaPredicted RBP10.37□□□□□ -0.75
MSH6-214ENST00000616033 OR9G4Q8NGQ1 327 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 HIST1H4GQ99525 98 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 DYNLRB1Q9NP97 96 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 TRBV19A0A075B6N1 114 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 PRSS29PA6NIE9 313 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 TM4SF5O14894 197 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 LGALS9BQ3B8N2 356 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 LGALS9CQ6DKI2 356 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 PPP1R27Q86WC6 154 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 PRSS33Q8NF86 280 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 ATRXP46100 2492 aa10.37□□□□□ -0.75
MSH6-214ENST00000616033 VSTM5A8MXK1 200 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 ZNF479Q96JC4 524 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 MRPL16Q9NX20 251 aaKnown RBP10.36□□□□□ -0.75
MSH6-214ENST00000616033 TRBV7-9A0A0J9YWB2 115 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 IGKV1-17P01599 117 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 EGR2P11161 476 aaPredicted RBP10.36□□□□□ -0.75
MSH6-214ENST00000616033 SPANXB1Q9NS25 103 aaPredicted RBP10.36□□□□□ -0.75
MSH6-214ENST00000616033 TLN1Q9Y490 2541 aaKnown RBP10.36□□□□□ -0.75
MSH6-214ENST00000616033 CD40P25942 277 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 TMEM158Q8WZ71 300 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 CTSZQ9UBR2 303 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 SIGLEC9Q9Y336 463 aa10.36□□□□□ -0.75
MSH6-214ENST00000616033 TRBV25-1A0A075B6N4 114 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 TMEM8BA6NDV4 472 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 ERCC8Q13216 396 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 GAGE13Q4V321 117 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 RPEQ96AT9 228 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 RNF125Q96EQ8 232 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 CREBBPQ92793 2442 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 TRAV17A0A0B4J275 112 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 SRSF9Q13242 221 aaKnown RBP eCLIP10.35□□□□□ -0.75
MSH6-214ENST00000616033 C8orf86Q6ZUL3 223 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 KIR2DL4Q99706 377 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 ARL3P36405 182 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 ZNF80P51504 273 aaPredicted RBP10.35□□□□□ -0.75
MSH6-214ENST00000616033 SIGLEC15Q6ZMC9 328 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 MAP1LC3AQ9H492 121 aa10.35□□□□□ -0.75
MSH6-214ENST00000616033 DCHS2Q6V1P9 2916 aa10.34□□□□□ -0.75
MSH6-214ENST00000616033 CHD8Q9HCK8 2581 aa10.34□□□□□ -0.75
MSH6-214ENST00000616033 EFNA4P52798 201 aa10.34□□□□□ -0.75
MSH6-214ENST00000616033 IGKCP01834 107 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 CYSLTR1Q9Y271 337 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 NOTCH3Q9UM47 2321 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 LINC01548A6NM66 108 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 PRTN3P24158 256 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 MAPKAPK5-AS1Q8N8E1 139 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 C1QTNF4Q9BXJ3 329 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 MRPL35Q9NZE8 188 aaKnown RBP10.33□□□□□ -0.76
MSH6-214ENST00000616033 NCOR2Q9Y618 2525 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 IGHG3P01860 377 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 SMIM17P0DL12 118 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 XGP55808 180 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 ONECUT1Q9UBC0 465 aa10.33□□□□□ -0.76
MSH6-214ENST00000616033 ANKHD1Q8IWZ3 2542 aaKnown RBP10.32□□□□□ -0.76
MSH6-214ENST00000616033 IGLV3-9A0A075B6K5 115 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 NCBP2LA6PVI3 153 aaKnown RBP10.32□□□□□ -0.76
MSH6-214ENST00000616033 C17orf100A8MU93 164 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 IGHV1-8P0DP01 117 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 PSMB2P49721 201 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 RNF182Q8N6D2 247 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 LY6HO94772 140 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 BSPH1Q075Z2 132 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 MRGPRG-AS1Q2M3A8 158 aa10.32□□□□□ -0.76
MSH6-214ENST00000616033 CRYGCP07315 174 aa10.31□□□□□ -0.76
MSH6-214ENST00000616033 LOXP28300 417 aaPredicted RBP10.31□□□□□ -0.76
MSH6-214ENST00000616033 ZNF491Q8N8L2 437 aa10.31□□□□□ -0.76
MSH6-214ENST00000616033 SHANK2-AS3Q9BTD1 123 aa10.31□□□□□ -0.76
MSH6-214ENST00000616033 TNFRSF6BO95407 300 aa10.31□□□□□ -0.76
MSH6-214ENST00000616033 ZNF562Q6V9R5 426 aa10.31□□□□□ -0.76
MSH6-214ENST00000616033 IGHV1-3A0A0C4DH29 117 aa10.3□□□□□ -0.76
MSH6-214ENST00000616033 C16orf97H3BN30 126 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms