RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RFESDQ8TAC1 157 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 MLST8Q9BVC4 326 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 SSUH2Q9Y2M2 353 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 A0A1B0GUT8 65 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 TCL1BO95988 128 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 NPYP01303 97 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 LINC00205P59089 165 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 TNFAIP6P98066 277 aaPredicted RBP8.09□□□□□ -1.11
VPS39-214ENST00000614932 PAX8Q06710 450 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 RIGQ13278 110 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 SFTA2Q6UW10 78 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 DKK4Q9UBT3 224 aa8.09□□□□□ -1.11
VPS39-214ENST00000614932 USF3Q68DE3 2245 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 IGHV3-43A0A0B4J1X8 118 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 M0R2P5 195 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 IGHV3-43DP0DP04 118 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 GATA4P43694 442 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 PDPNQ86YL7 162 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 PRSS33Q8NF86 280 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 FAM57AQ8TBR7 257 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 DCTN5Q9BTE1 182 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 DEFB108AA8MXU0 73 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 FOXC1Q12948 553 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 ZNF493Q6ZR52 646 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 SLC25A48Q6ZT89 311 aaKnown RBP8.08□□□□□ -1.12
VPS39-214ENST00000614932 SEM1Q6ZVN7 128 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 ASCL5Q7RTU5 278 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 C3orf22Q8N5N4 141 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 ZNRF2Q8NHG8 242 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 TRGV9Q99603 122 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 IFI27L2Q9H2X8 130 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 MSRB2Q9Y3D2 182 aa8.08□□□□□ -1.12
VPS39-214ENST00000614932 TRAV2A0A0B4J234 112 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 TRAV8-4A0A0B4J246 113 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 DPM2O94777 84 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 HSPE1P61604 102 aaKnown RBP8.07□□□□□ -1.12
VPS39-214ENST00000614932 EDDM3AQ14507 147 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 WFDC3Q8IUB2 231 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 OR4C13Q8NGP0 309 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 ITLN1Q8WWA0 313 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 M0R1B8 84 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 DUTP33316 252 aaKnown RBP8.07□□□□□ -1.12
VPS39-214ENST00000614932 FAM167A-AS1Q96KT0 104 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 IGHV3OR15-7A0A075B7D8 119 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 DLL1O00548 723 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 GNG5P63218 68 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 TWIST1Q15672 202 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 MSMPQ1L6U9 139 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 FAM201AQ5SY85 155 aa8.07□□□□□ -1.12
VPS39-214ENST00000614932 CUL9Q8IWT3 2517 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 IGHV1-18A0A0C4DH31 117 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 D6R8Y8 96 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 SLC25A20O43772 301 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 ARMS2P0C7Q2 107 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 C22orf34Q6ZV56 151 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 OR11H6Q8NGC7 330 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 DUX3Q96PT4 197 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 PRSS1P07477 247 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 CD7P09564 240 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 ZNF497Q6ZNH5 498 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 NPIPB3Q92617 1050 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 ZNF71Q9NQZ8 489 aaPredicted RBP8.06□□□□□ -1.12
VPS39-214ENST00000614932 CALYQ9NYX4 217 aa8.06□□□□□ -1.12
VPS39-214ENST00000614932 POLEQ07864 2286 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 IQCF6A8MYZ5 107 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 OVOL3O00110 214 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 UQCRQO14949 82 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 IGKV3-15P01624 115 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 IGFL2Q6UWQ7 119 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 C11orf53Q8IXP5 236 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 TRGV8A0A0C4DH27 118 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 LINC00473A8K010 186 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 UBE2D1P51668 147 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 Q8N1Y9 231 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 LINC00526Q96FQ7 95 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 PAXXQ9BUH6 204 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 KLK5Q9Y337 293 aaPredicted RBP8.05□□□□□ -1.12
VPS39-214ENST00000614932 U3KQK5 164 aa8.05□□□□□ -1.12
VPS39-214ENST00000614932 NBASA2RRP1 2371 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 PLCE1Q9P212 2302 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 NCBP2LA6PVI3 153 aaKnown RBP8.04□□□□□ -1.12
VPS39-214ENST00000614932 SPRY3O43610 288 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 ORM1P02763 201 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 PYYP10082 97 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 FAM27E3Q08E93 113 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 ZGRF1Q86YA3 2104 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 ORMDL3Q8N138 153 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 AAMDCQ9H7C9 122 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 CRYGBP07316 175 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 MORN5Q5VZ52 161 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 TRPT1Q86TN4 253 aaKnown RBP8.04□□□□□ -1.12
VPS39-214ENST00000614932 FMC1Q96HJ9 113 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 FAM215AQ9Y5M1 114 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 PKDREJQ9NTG1 2253 aa8.04□□□□□ -1.12
VPS39-214ENST00000614932 ZZEF1O43149 2961 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 TRBV7-7A0A0K0K1E9 115 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 C12orf77C9JDV5 145 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 ATP5LO75964 103 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 CFHR4Q92496 578 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 TMEM160Q9NX00 188 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms