RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 H7BYZ3 331 aa13.53□□□□□ -0.24
VRK3-225ENST00000601912 TMEM61Q8N0U2 210 aa13.53□□□□□ -0.24
VRK3-225ENST00000601912 OR10G8Q8NGN5 311 aa13.53□□□□□ -0.24
VRK3-225ENST00000601912 OR10J6PQ8NGY7 276 aa13.53□□□□□ -0.24
VRK3-225ENST00000601912 NDFIP1Q9BT67 221 aa13.53□□□□□ -0.24
VRK3-225ENST00000601912 TRAV25A0A0B4J276 109 aa13.52□□□□□ -0.25
VRK3-225ENST00000601912 CXorf65A6NEN9 183 aa13.52□□□□□ -0.25
VRK3-225ENST00000601912 CD300EQ496F6 205 aaPredicted RBP13.52□□□□□ -0.25
VRK3-225ENST00000601912 TMEM78Q5T7P6 136 aa13.52□□□□□ -0.25
VRK3-225ENST00000601912 TUBA4BQ9H853 241 aa13.52□□□□□ -0.25
VRK3-225ENST00000601912 SAP30O75446 220 aa13.51□□□□□ -0.25
VRK3-225ENST00000601912 ERCC8Q13216 396 aa13.51□□□□□ -0.25
VRK3-225ENST00000601912 C9orf47Q6ZRZ4 202 aa13.51□□□□□ -0.25
VRK3-225ENST00000601912 PRIMA1Q86XR5 153 aa13.51□□□□□ -0.25
VRK3-225ENST00000601912 ZNF688P0C7X2 276 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 IBA57Q5T440 356 aaKnown RBP13.5□□□□□ -0.25
VRK3-225ENST00000601912 PRR27Q6MZM9 219 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 PRR25Q96S07 402 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 SPAG8Q99932 426 aaPredicted RBP13.5□□□□□ -0.25
VRK3-225ENST00000601912 OSTCQ9NRP0 149 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 CT45A10P0DMU9 189 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 ZNF138P52744 262 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 PSMG4Q5JS54 123 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 LINC00482Q8N8I6 264 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 Q8TAT8 98 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 LINC00477Q96M19 166 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 AGPAT4-IT1Q9H0P7 198 aa13.5□□□□□ -0.25
VRK3-225ENST00000601912 OR4C46A6NHA9 309 aa13.49□□□□□ -0.25
VRK3-225ENST00000601912 FAM231DQ6ZW35 169 aa13.49□□□□□ -0.25
VRK3-225ENST00000601912 FAM24BQ8N5W8 94 aa13.49□□□□□ -0.25
VRK3-225ENST00000601912 OR8A1Q8NGG7 326 aa13.49□□□□□ -0.25
VRK3-225ENST00000601912 DAZAP1Q96EP5 407 aaKnown RBP13.49□□□□□ -0.25
VRK3-225ENST00000601912 RNASE7Q9H1E1 156 aaKnown RBP13.49□□□□□ -0.25
VRK3-225ENST00000601912 HIST1H1AQ02539 215 aaPredicted RBP13.48□□□□□ -0.25
VRK3-225ENST00000601912 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.48□□□□□ -0.25
VRK3-225ENST00000601912 ASCL2Q99929 193 aa13.48□□□□□ -0.25
VRK3-225ENST00000601912 PPP1R14DQ9NXH3 145 aa13.48□□□□□ -0.25
VRK3-225ENST00000601912 ZNF492Q9P255 531 aa13.48□□□□□ -0.25
VRK3-225ENST00000601912 NPIPB6E9PJ23 425 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 ZC2HC1AQ96GY0 325 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 C8orf49Q96NF6 230 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 ZNF705GA8MUZ8 300 aaPredicted RBP13.47□□□□□ -0.25
VRK3-225ENST00000601912 ZNF705DP0CH99 300 aaPredicted RBP13.47□□□□□ -0.25
VRK3-225ENST00000601912 ZNF705BP0CI00 300 aaPredicted RBP13.47□□□□□ -0.25
VRK3-225ENST00000601912 S100PP25815 95 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 EBLN2Q6P2I7 272 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 COX8CQ7Z4L0 72 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 OR2K2Q8NGT1 345 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 LENEPQ9Y5L5 61 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 ATRQ13535 2644 aa13.47□□□□□ -0.25
VRK3-225ENST00000601912 F6UB75 175 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 SMUG1Q53HV7 270 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 NUDT10Q8NFP7 164 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 TMEM158Q8WZ71 300 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 NUDT11Q96G61 164 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 IMMP2LQ96T52 175 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 ZNF747Q9BV97 191 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 GPR61Q9BZJ8 451 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 URGCP-MRPS24S4R325 110 aa13.46□□□□□ -0.26
VRK3-225ENST00000601912 GATCO43716 136 aaKnown RBP13.45□□□□□ -0.26
VRK3-225ENST00000601912 IGLV1-51P01701 117 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 P01737 135 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 DEFB1P60022 68 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 KCNIP4Q6PIL6 250 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 C3orf56Q8N813 242 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 V9GYV3 84 aa13.45□□□□□ -0.26
VRK3-225ENST00000601912 C19orf71A6NCJ1 209 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 FAM162BQ5T6X4 162 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 LINC00322Q6ZN03 302 aaPredicted RBP13.44□□□□□ -0.26
VRK3-225ENST00000601912 IZUMO1RA6ND01 250 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 DEFB131AP59861 70 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 C12orf54Q6X4T0 127 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 FOXI2Q6ZQN5 318 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 IL36BQ9NZH7 164 aa13.44□□□□□ -0.26
VRK3-225ENST00000601912 ZNF256Q9Y2P7 627 aaPredicted RBP13.44□□□□□ -0.26
VRK3-225ENST00000601912 TRBV7-9A0A0J9YWB2 115 aa13.43□□□□□ -0.26
VRK3-225ENST00000601912 A0A0J9YX75 114 aa13.43□□□□□ -0.26
VRK3-225ENST00000601912 DUSP14O95147 198 aaKnown RBP13.43□□□□□ -0.26
VRK3-225ENST00000601912 ELOBQ15370 118 aa13.43□□□□□ -0.26
VRK3-225ENST00000601912 SAV1Q9H4B6 383 aaPredicted RBP13.43□□□□□ -0.26
VRK3-225ENST00000601912 RPP21Q9H633 154 aaKnown RBP13.43□□□□□ -0.26
VRK3-225ENST00000601912 PFN1P07737 140 aaKnown RBP13.42□□□□□ -0.26
VRK3-225ENST00000601912 CRIP1P50238 77 aa13.42□□□□□ -0.26
VRK3-225ENST00000601912 INSL3P51460 131 aa13.42□□□□□ -0.26
VRK3-225ENST00000601912 OR4B1Q8NGF8 309 aa13.42□□□□□ -0.26
VRK3-225ENST00000601912 COLCA2A8K830 154 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 FABP5P3A8MUU1 101 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 CD33P20138 364 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 CMC4P56277 68 aaPredicted RBP13.41□□□□□ -0.26
VRK3-225ENST00000601912 GDF5OSQ5U4N7 250 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 SHISA2Q6UWI4 295 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 MAP6D1Q9H9H5 199 aa13.41□□□□□ -0.26
VRK3-225ENST00000601912 SH2D1AO60880 128 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 CT83Q5H943 113 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 C9orf66Q5T8R8 295 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 YPEL4Q96NS1 127 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 SORL1Q92673 2214 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 TENM1Q9UKZ4 2725 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 A8MWL6 223 aa13.4□□□□□ -0.26
VRK3-225ENST00000601912 FAM3BP58499 235 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms