RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 DEFB131BA0A096LNP1 70 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 KANTRA0A1W2PQU2 76 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 PGPA6NDG6 321 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 IGLL5B9A064 214 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 HMGB3O15347 200 aaKnown RBP13.89□□□□□ -0.19
UPF1-212ENST00000601689 GPX1P07203 203 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 NMBP08949 121 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 STAG3L2P0CL84 134 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 STAG3L3P0CL85 134 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 EIF5AP63241 154 aaKnown RBP13.89□□□□□ -0.19
UPF1-212ENST00000601689 ERCC8Q13216 396 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 C12orf74Q32Q52 190 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 ARL6IP6Q8N6S5 226 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 HYLS1Q96M11 299 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 PYGO2Q9BRQ0 406 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 SH3BGRL3Q9H299 93 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 CELA1Q9UNI1 258 aa13.89□□□□□ -0.19
UPF1-212ENST00000601689 IGKV2-40A0A087WW87 121 aaPredicted RBP13.88□□□□□ -0.19
UPF1-212ENST00000601689 LYRM9A8MSI8 78 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 SMLR1H3BR10 107 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 IGKV2D-40P01614 121 aaPredicted RBP13.88□□□□□ -0.19
UPF1-212ENST00000601689 ARL14EPLP0DKL9 152 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 DAD1P61803 113 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 GFI1BQ5VTD9 330 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 IQCF2Q8IXL9 164 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 AGPAT4-IT1Q9H0P7 198 aa13.88□□□□□ -0.19
UPF1-212ENST00000601689 KMT2CQ8NEZ4 4911 aaKnown RBP13.88□□□□□ -0.19
UPF1-212ENST00000601689 TRAV12-3A0A0B4J271 114 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 TRBV7-9A0A0J9YWB2 115 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 C7orf71A4D174 169 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 G3V3Q6 166 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 K7EQM0 130 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 ZNF138P52744 262 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 KCNRGQ8N5I3 272 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 TMEM263Q8WUH6 116 aaKnown RBP13.87□□□□□ -0.19
UPF1-212ENST00000601689 ZNF492Q9P255 531 aa13.87□□□□□ -0.19
UPF1-212ENST00000601689 TIMM8BQ9Y5J9 83 aaPredicted RBP13.87□□□□□ -0.19
UPF1-212ENST00000601689 LY6G6CO95867 125 aa13.86□□□□□ -0.19
UPF1-212ENST00000601689 ZNF767PQ75MW2 155 aa13.86□□□□□ -0.19
UPF1-212ENST00000601689 RPH3ALQ9UNE2 315 aa13.86□□□□□ -0.19
UPF1-212ENST00000601689 TENM2Q9NT68 2774 aa13.86□□□□□ -0.19
UPF1-212ENST00000601689 CTXND1A0A1B0GTU2 59 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 SERTM2A0A1B0GWG4 89 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 SNURFLB1AK76 121 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 DIRC3C9JPN6 131 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 PFDN1O60925 122 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 EIF3GO75821 320 aaKnown RBP eCLIP13.85□□□□□ -0.19
UPF1-212ENST00000601689 CRISP2P16562 243 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 GCHFRP30047 84 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 RNASE4P34096 147 aaKnown RBP13.85□□□□□ -0.19
UPF1-212ENST00000601689 VGLL1Q99990 258 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 LENEPQ9Y5L5 61 aa13.85□□□□□ -0.19
UPF1-212ENST00000601689 KLLNB2CW77 178 aa13.84□□□□□ -0.19
UPF1-212ENST00000601689 STOML3Q8TAV4 291 aa13.84□□□□□ -0.19
UPF1-212ENST00000601689 ST6GAL2Q96JF0 529 aa13.84□□□□□ -0.19
UPF1-212ENST00000601689 ZNF471Q9BX82 626 aaPredicted RBP13.84□□□□□ -0.19
UPF1-212ENST00000601689 RGS13O14921 159 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 ZNF680Q8NEM1 530 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 TMED6Q8WW62 240 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 LINC00476Q8WZB0 136 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 FAM210BQ96KR6 192 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 FAM19A4Q96LR4 140 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 NDFIP1Q9BT67 221 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 NDUFAF3Q9BU61 184 aa13.83□□□□□ -0.2
UPF1-212ENST00000601689 HTN3P15516 51 aa13.82□□□□□ -0.2
UPF1-212ENST00000601689 AZU1P20160 251 aa13.82□□□□□ -0.2
UPF1-212ENST00000601689 KIR3DS1Q14943 382 aa13.82□□□□□ -0.2
UPF1-212ENST00000601689 C5orf17Q8NAS9 161 aa13.82□□□□□ -0.2
UPF1-212ENST00000601689 IGHV4-4A0A075B6R2 117 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 CBY3A6NI87 242 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 UMAD1C9J7I0 102 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 BCL2L11O43521 198 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 PRM2P04554 102 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 DEFB130BP0DP73 79 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 DEFB130AP0DP74 79 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 BTN1A1Q13410 526 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 LGALS9CQ6DKI2 356 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 GOLT1AQ6ZVE7 132 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 EIF4E3Q8N5X7 224 aaKnown RBP13.81□□□□□ -0.2
UPF1-212ENST00000601689 RNASE8Q8TDE3 154 aaKnown RBP13.81□□□□□ -0.2
UPF1-212ENST00000601689 NKX6-2Q9C056 277 aaPredicted RBP13.81□□□□□ -0.2
UPF1-212ENST00000601689 CYTL1Q9NRR1 136 aa13.81□□□□□ -0.2
UPF1-212ENST00000601689 SEC11BP0C7V7 166 aa13.8□□□□□ -0.2
UPF1-212ENST00000601689 OR11H4Q8NGC9 324 aa13.8□□□□□ -0.2
UPF1-212ENST00000601689 Q8TAT8 98 aa13.8□□□□□ -0.2
UPF1-212ENST00000601689 SUN5Q8TC36 379 aa13.8□□□□□ -0.2
UPF1-212ENST00000601689 NOP10Q9NPE3 64 aaKnown RBP13.8□□□□□ -0.2
UPF1-212ENST00000601689 A0A1W2PRE2 83 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 FBLL1A6NHQ2 334 aaKnown RBP13.79□□□□□ -0.2
UPF1-212ENST00000601689 TPT1P13693 172 aaKnown RBP13.79□□□□□ -0.2
UPF1-212ENST00000601689 SUMO1P63165 101 aaKnown RBP13.79□□□□□ -0.2
UPF1-212ENST00000601689 CD300CQ08708 224 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 EIF5AL1Q6IS14 154 aaKnown RBP13.79□□□□□ -0.2
UPF1-212ENST00000601689 Q6ZNX1 250 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 TCTE3Q8IZS6 198 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 ZFAND2AQ8N6M9 145 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 LINC00467Q9BRT7 94 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 LYSTQ99698 3801 aa13.79□□□□□ -0.2
UPF1-212ENST00000601689 ZNF324O75467 553 aaPredicted RBP13.78□□□□□ -0.2
UPF1-212ENST00000601689 ATP5G1P05496 136 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms