RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SLC25A5P05141 298 aaKnown RBP11.56□□□□□ -0.56
LSM4-206ENST00000600289 NMBP08949 121 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 STAG3L2P0CL84 134 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 STAG3L3P0CL85 134 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 CRISP2P16562 243 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 CDC34P49427 236 aaPredicted RBP11.56□□□□□ -0.56
LSM4-206ENST00000600289 ARL6IP6Q8N6S5 226 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 C2CD4CQ8TF44 421 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 SH3BGRL3Q9H299 93 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 Q9H3A6 140 aa11.56□□□□□ -0.56
LSM4-206ENST00000600289 TRBV7-9A0A0J9YWB2 115 aa11.55□□□□□ -0.56
LSM4-206ENST00000600289 KLLNB2CW77 178 aa11.55□□□□□ -0.56
LSM4-206ENST00000600289 RANP62826 216 aaKnown RBP11.55□□□□□ -0.56
LSM4-206ENST00000600289 SUN5Q8TC36 379 aa11.55□□□□□ -0.56
LSM4-206ENST00000600289 AGPAT4-IT1Q9H0P7 198 aa11.55□□□□□ -0.56
LSM4-206ENST00000600289 OTORQ9NRC9 128 aa11.55□□□□□ -0.56
LSM4-206ENST00000600289 YTHDF2Q9Y5A9 579 aaKnown RBP11.55□□□□□ -0.56
LSM4-206ENST00000600289 ZNF705GA8MUZ8 300 aaPredicted RBP11.54□□□□□ -0.56
LSM4-206ENST00000600289 CSN1S1P47710 185 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 KIR3DS1Q14943 382 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 TMEM78Q5T7P6 136 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 FAM222AQ5U5X8 452 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 ZNF493Q6ZR52 646 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 KCNRGQ8N5I3 272 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 RXFP4Q8TDU9 374 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 LINC00476Q8WZB0 136 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 RAB24Q969Q5 203 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 C16orf74Q96GX8 76 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 LINC01587Q99440 93 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 CYTL1Q9NRR1 136 aa11.54□□□□□ -0.56
LSM4-206ENST00000600289 IGKV2-40A0A087WW87 121 aaPredicted RBP11.53□□□□□ -0.56
LSM4-206ENST00000600289 PLAC8L1A1L4L8 177 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 LYRM9A8MSI8 78 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 SMLR1H3BR10 107 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 IGKV2D-40P01614 121 aaPredicted RBP11.53□□□□□ -0.56
LSM4-206ENST00000600289 ARL14EPLP0DKL9 152 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 EMP1P54849 157 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 ERCC8Q13216 396 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 TMEM263Q8WUH6 116 aaKnown RBP11.53□□□□□ -0.56
LSM4-206ENST00000600289 NIPSNAP3BQ9BS92 247 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 ACTR3CQ9C0K3 210 aaPredicted RBP11.53□□□□□ -0.56
LSM4-206ENST00000600289 ZNF492Q9P255 531 aa11.53□□□□□ -0.56
LSM4-206ENST00000600289 DIRC3C9JPN6 131 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 EIF3GO75821 320 aaKnown RBP eCLIP11.52□□□□□ -0.57
LSM4-206ENST00000600289 AZU1P20160 251 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 FAM74A1Q5RGS3 127 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 RNASE8Q8TDE3 154 aaKnown RBP11.52□□□□□ -0.57
LSM4-206ENST00000600289 TMED6Q8WW62 240 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 VGLL1Q99990 258 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 LINC00467Q9BRT7 94 aa11.52□□□□□ -0.57
LSM4-206ENST00000600289 MUC4Q99102 2169 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 C7orf71A4D174 169 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 CXorf1O96002 111 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 ZNF138P52744 262 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 ZFAND2AQ8N6M9 145 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 OR11H4Q8NGC9 324 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 ARPC5LQ9BPX5 153 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 PYGO2Q9BRQ0 406 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 LENEPQ9Y5L5 61 aa11.51□□□□□ -0.57
LSM4-206ENST00000600289 DEFB131BA0A096LNP1 70 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 TRAV12-3A0A0B4J271 114 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 A0A0D9SG52 128 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 HMGB3O15347 200 aaKnown RBP11.5□□□□□ -0.57
LSM4-206ENST00000600289 ZNF324O75467 553 aaPredicted RBP11.5□□□□□ -0.57
LSM4-206ENST00000600289 PRM2P04554 102 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 GCHFRP30047 84 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 Q6ZNX1 250 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 ZNF767PQ75MW2 155 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 ST6GAL2Q96JF0 529 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 TMEM167BQ9NRX6 74 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 APLNQ9ULZ1 77 aa11.5□□□□□ -0.57
LSM4-206ENST00000600289 DNAH6Q9C0G6 4158 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 CTXND1A0A1B0GTU2 59 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 PGPA6NDG6 321 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 LGALS9CQ6DKI2 356 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 SSX7Q7RTT5 188 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 CMTM2Q8TAZ6 248 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 FAM210BQ96KR6 192 aa11.49□□□□□ -0.57
LSM4-206ENST00000600289 IGHV4-4A0A075B6R2 117 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 SERTM2A0A1B0GWG4 89 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 IGLL5B9A064 214 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 J3KRW8 73 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 BCL2L11O43521 198 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 GPX1P07203 203 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 DAD1P61803 113 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 CD300CQ08708 224 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 BTN1A1Q13410 526 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 ZNF726P1Q15940 193 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 AKR1C8PQ5T2L2 129 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 CCDC28AQ8IWP9 274 aa11.48□□□□□ -0.57
LSM4-206ENST00000600289 TIMM8BQ9Y5J9 83 aaPredicted RBP11.48□□□□□ -0.57
LSM4-206ENST00000600289 PRR9Q5T870 116 aa11.47□□□□□ -0.57
LSM4-206ENST00000600289 TCTE3Q8IZS6 198 aa11.47□□□□□ -0.57
LSM4-206ENST00000600289 LINC00612Q8N6U2 182 aa11.47□□□□□ -0.57
LSM4-206ENST00000600289 C5orf17Q8NAS9 161 aa11.47□□□□□ -0.57
LSM4-206ENST00000600289 Q8TAT8 98 aa11.47□□□□□ -0.57
LSM4-206ENST00000600289 KANTRA0A1W2PQU2 76 aa11.46□□□□□ -0.57
LSM4-206ENST00000600289 A0A1W2PRE2 83 aa11.46□□□□□ -0.57
LSM4-206ENST00000600289 SEC11BP0C7V7 166 aa11.46□□□□□ -0.57
LSM4-206ENST00000600289 HTN1P15515 57 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms