RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 TP53TG1Q9Y2A0 90 aa12.25□□□□□ -0.45
USHBP1-210ENST00000600286 YTHDF2Q9Y5A9 579 aaKnown RBP12.25□□□□□ -0.45
USHBP1-210ENST00000600286 IGKV2-40A0A087WW87 121 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-210ENST00000600286 SPRY2O43597 315 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 IGKV2D-40P01614 121 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-210ENST00000600286 CDKN1BP46527 198 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 ZNF138P52744 262 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 FXYD7P58549 80 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 ERCC8Q13216 396 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 ZNF680Q8NEM1 530 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 ODF3Q96PU9 254 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 TM2D3Q9BRN9 247 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 AGPAT4-IT1Q9H0P7 198 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 SLC35B3Q9H1N7 401 aa12.24□□□□□ -0.45
USHBP1-210ENST00000600286 GGTLC3B5MD39 225 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 TCRAP04437 139 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 PRB4P10163 310 aaPredicted RBP12.23□□□□□ -0.45
USHBP1-210ENST00000600286 RAB14P61106 215 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 DEFB135Q30KP9 77 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 RNF183Q96D59 192 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 ATG101Q9BSB4 218 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 NDFIP1Q9BT67 221 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 TMEM208Q9BTX3 173 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 GOLT1BQ9Y3E0 138 aa12.23□□□□□ -0.45
USHBP1-210ENST00000600286 C11orf94C9JXX5 98 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 INSP01308 110 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 CT45A10P0DMU9 189 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 GNG5P63218 68 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 PMS2P11Q13670 270 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 SPINK13Q1W4C9 94 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 AMTNQ6UX39 209 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 CYB561D1Q8N8Q1 229 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 IGF2BP2-AS1Q96M15 143 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 VGLL1Q99990 258 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 LENEPQ9Y5L5 61 aa12.22□□□□□ -0.45
USHBP1-210ENST00000600286 TRBV7-9A0A0J9YWB2 115 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 M0R2Z0 102 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 PEX7O00628 323 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 CCL20P78556 96 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 RARRES2Q99969 163 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 ZNF492Q9P255 531 aa12.21□□□□□ -0.45
USHBP1-210ENST00000600286 S100A9P06702 114 aaKnown RBP12.2□□□□□ -0.46
USHBP1-210ENST00000600286 GPX1P07203 203 aa12.2□□□□□ -0.46
USHBP1-210ENST00000600286 NMBP08949 121 aa12.2□□□□□ -0.46
USHBP1-210ENST00000600286 UBE2G1P62253 170 aa12.2□□□□□ -0.46
USHBP1-210ENST00000600286 VAX2Q9UIW0 290 aa12.2□□□□□ -0.46
USHBP1-210ENST00000600286 ATP5G3P48201 142 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 SAPCD1Q5SSQ6 148 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 TMEM256Q8N2U0 113 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 TMEM75Q8N9X5 138 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 OR11H2Q8NH07 326 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 C20orf144Q9BQM9 153 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 OVOL2Q9BRP0 275 aa12.19□□□□□ -0.46
USHBP1-210ENST00000600286 AGRNO00468 2067 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 IGHV3OR16-12A0A075B7B8 117 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 J3KRW8 73 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 PDE6DO43924 150 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 GIG44P09565 113 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-210ENST00000600286 BCL2P10415 239 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 AKR1C3P42330 323 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 FLI1Q01543 452 aaPredicted RBP12.18□□□□□ -0.46
USHBP1-210ENST00000600286 ZNF767PQ75MW2 155 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 CCDC28AQ8IWP9 274 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 NIPSNAP3BQ9BS92 247 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 PSG8Q9UQ74 426 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 U3KQK5 164 aa12.18□□□□□ -0.46
USHBP1-210ENST00000600286 TRAV12-2A0A075B6T6 113 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 CRISP2P16562 243 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 RNASE4P34096 147 aaKnown RBP12.17□□□□□ -0.46
USHBP1-210ENST00000600286 MEF2BQ02080 365 aaPredicted RBP12.17□□□□□ -0.46
USHBP1-210ENST00000600286 PRNTQ86SH4 94 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 LYPD6BQ8NI32 183 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 FMC1Q96HJ9 113 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 LINC01587Q99440 93 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 RETNQ9HD89 108 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 TREM1Q9NP99 234 aa12.17□□□□□ -0.46
USHBP1-210ENST00000600286 RBFOX3A6NFN3 312 aa12.16□□□□□ -0.46
USHBP1-210ENST00000600286 SMIM9A6NGZ8 99 aa12.16□□□□□ -0.46
USHBP1-210ENST00000600286 CSNK1G2-AS1Q8NCQ2 148 aa12.16□□□□□ -0.46
USHBP1-210ENST00000600286 Q8TAT8 98 aa12.16□□□□□ -0.46
USHBP1-210ENST00000600286 EIF5A2Q9GZV4 153 aaKnown RBP12.16□□□□□ -0.46
USHBP1-210ENST00000600286 HUWE1Q7Z6Z7 4374 aaKnown RBP12.16□□□□□ -0.46
USHBP1-210ENST00000600286 TRAV8-1A0A0A6YYK1 113 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 C7orf71A4D174 169 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 H7BYZ3 331 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 MIFP14174 115 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 FAM19A4Q96LR4 140 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 SGK494Q96LW2 274 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 ZFP30Q9Y2G7 519 aa12.15□□□□□ -0.46
USHBP1-210ENST00000600286 RYR3Q15413 4870 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 TRAV12-3A0A0B4J271 114 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 TRAV34A0A0B4J273 112 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 KLLNB2CW77 178 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 CRXO43186 299 aaPredicted RBP12.14□□□□□ -0.47
USHBP1-210ENST00000600286 RRN3P1Q2M238 152 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 SMUG1Q53HV7 270 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 GFI1BQ5VTD9 330 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 NEU1Q99519 415 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 MED9Q9NWA0 146 aa12.14□□□□□ -0.47
USHBP1-210ENST00000600286 LOC102723971A0A1B0GUV8 181 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms