RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 RRN3P1Q2M238 152 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 GFI1BQ5VTD9 330 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 LYPD1Q8N2G4 141 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 C9orf62Q8N4C0 152 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 STOML3Q8TAV4 291 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 ODF3Q96PU9 254 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 LINC01587Q99440 93 aa10.91□□□□□ -0.66
LIG1-219ENST00000600055 ACTR3CQ9C0K3 210 aaPredicted RBP10.91□□□□□ -0.66
LIG1-219ENST00000600055 PGPA6NDG6 321 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 NUPR2A6NF83 97 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 SEC11BP0C7V7 166 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 AZU1P20160 251 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 GCHFRP30047 84 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 LEPP41159 167 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 ZNF726P1Q15940 193 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 C12orf74Q32Q52 190 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 C9orf47Q6ZRZ4 202 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 LINC00477Q96M19 166 aa10.9□□□□□ -0.66
LIG1-219ENST00000600055 TMEM189A5PLL7 270 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 UMAD1C9J7I0 102 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 HTN1P15515 57 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 CSN1S1P47710 185 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 AKR1C8PQ5T2L2 129 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 Q6ZTC4 211 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 FAM19A4Q96LR4 140 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 OTORQ9NRC9 128 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 PLA2G2EQ9NZK7 142 aa10.89□□□□□ -0.67
LIG1-219ENST00000600055 YTHDF2Q9Y5A9 579 aaKnown RBP10.89□□□□□ -0.67
LIG1-219ENST00000600055 TRAV12-3A0A0B4J271 114 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 DIRC3C9JPN6 131 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 TMEM78Q5T7P6 136 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 FAM222AQ5U5X8 452 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 TMEM256Q8N2U0 113 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 Q8TAT8 98 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 ZNF492Q9P255 531 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 DKK2Q9UBU2 259 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 RPH3ALQ9UNE2 315 aa10.88□□□□□ -0.67
LIG1-219ENST00000600055 CXorf1O96002 111 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 SPART-AS1P0CW21 52 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 RAB5CP51148 216 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 NKX2-5P52952 324 aaPredicted RBP10.87□□□□□ -0.67
LIG1-219ENST00000600055 TAS2R60P59551 318 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 GNG5P63218 68 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 BTN1A1Q13410 526 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 SUN5Q8TC36 379 aa10.87□□□□□ -0.67
LIG1-219ENST00000600055 CTXND1A0A1B0GTU2 59 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 PLAC8L1A1L4L8 177 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 C7orf71A4D174 169 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 KLLNB2CW77 178 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 H7BYZ3 331 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 SLC25A5P05141 298 aaKnown RBP10.86□□□□□ -0.67
LIG1-219ENST00000600055 RNASE4P34096 147 aaKnown RBP10.86□□□□□ -0.67
LIG1-219ENST00000600055 ZNF138P52744 262 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 FGF8P55075 233 aaPredicted RBP10.86□□□□□ -0.67
LIG1-219ENST00000600055 PRR9Q5T870 116 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 DPPA3Q6W0C5 159 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 IQCF2Q8IXL9 164 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 ZFAND2AQ8N6M9 145 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 CMTM2Q8TAZ6 248 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 RXFP4Q8TDU9 374 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 C20orf144Q9BQM9 153 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 TMPRSS5Q9H3S3 457 aa10.86□□□□□ -0.67
LIG1-219ENST00000600055 KLK5Q9Y337 293 aaPredicted RBP10.86□□□□□ -0.67
LIG1-219ENST00000600055 DYNC2H1Q8NCM8 4307 aaKnown RBP10.85□□□□□ -0.67
LIG1-219ENST00000600055 LCE6AA0A183 80 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 RBAKDNA6NC62 111 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 CRISP2P16562 243 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 FHITP49789 147 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 FAM74A1Q5RGS3 127 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 Q6ZQT7 251 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 GOLT1AQ6ZVE7 132 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 TMEM167BQ9NRX6 74 aa10.85□□□□□ -0.67
LIG1-219ENST00000600055 PLECQ15149 4684 aaKnown RBP10.84□□□□□ -0.67
LIG1-219ENST00000600055 TRAV10A0A0B4J240 114 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 C11orf94C9JXX5 98 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 ZNF324O75467 553 aaPredicted RBP10.84□□□□□ -0.67
LIG1-219ENST00000600055 GPX1P07203 203 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 NIPSNAP3BQ9BS92 247 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 TENM2Q9NT68 2774 aa10.84□□□□□ -0.67
LIG1-219ENST00000600055 TRAV8-1A0A0A6YYK1 113 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 MAP1LC3B2A6NCE7 125 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 GGTLC3B5MD39 225 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 TEX46H3BTG2 121 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 SUMO1P63165 101 aaKnown RBP10.83□□□□□ -0.68
LIG1-219ENST00000600055 RNASE8Q8TDE3 154 aaKnown RBP10.83□□□□□ -0.68
LIG1-219ENST00000600055 C2CD4CQ8TF44 421 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 TMED6Q8WW62 240 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 C16orf74Q96GX8 76 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 SGK494Q96LW2 274 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 LYSTQ99698 3801 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 MAP1LC3BQ9GZQ8 125 aa10.83□□□□□ -0.68
LIG1-219ENST00000600055 DEFB131BA0A096LNP1 70 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 IGLL5B9A064 214 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 NMBP08949 121 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 UBE2G2P60604 165 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 ARL6IP6Q8N6S5 226 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 TMEM263Q8WUH6 116 aaKnown RBP10.82□□□□□ -0.68
LIG1-219ENST00000600055 PYGO2Q9BRQ0 406 aa10.82□□□□□ -0.68
LIG1-219ENST00000600055 RYR3Q15413 4870 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms