RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CT45A10P0DMU9 189 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 ERCC8Q13216 396 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 SPINK13Q1W4C9 94 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 C9orf47Q6ZRZ4 202 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 CMTM2Q8TAZ6 248 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 LINC00477Q96M19 166 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 PPP1R14DQ9NXH3 145 aa13.21□□□□□ -0.29
LIG1-216ENST00000598938 CRXO43186 299 aaPredicted RBP13.2□□□□□ -0.3
LIG1-216ENST00000598938 SLC25A5P05141 298 aaKnown RBP13.2□□□□□ -0.3
LIG1-216ENST00000598938 IGF2BP2-AS1Q96M15 143 aa13.2□□□□□ -0.3
LIG1-216ENST00000598938 VGLL1Q99990 258 aa13.2□□□□□ -0.3
LIG1-216ENST00000598938 AGPAT4-IT1Q9H0P7 198 aa13.2□□□□□ -0.3
LIG1-216ENST00000598938 YTHDF2Q9Y5A9 579 aaKnown RBP13.2□□□□□ -0.3
LIG1-216ENST00000598938 STARD9Q9P2P6 4700 aa13.2□□□□□ -0.3
LIG1-216ENST00000598938 FAM74A7A6NL05 159 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 ZNF705EA8MWA4 302 aaPredicted RBP13.19□□□□□ -0.3
LIG1-216ENST00000598938 UBE2G2P60604 165 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 SUMO1P63165 101 aaKnown RBP13.19□□□□□ -0.3
LIG1-216ENST00000598938 C5orf17Q8NAS9 161 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 OR11H2Q8NH07 326 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 FAM19A4Q96LR4 140 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 RARRES2Q99969 163 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 ARL2-SNX15V9GYD0 113 aa13.19□□□□□ -0.3
LIG1-216ENST00000598938 TRAV1-1A0A0B4J248 108 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 CDKN1BP46527 198 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 GNG5P63218 68 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 TMEM78Q5T7P6 136 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 ALKAL2Q6UX46 152 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 ZNF705AQ6ZN79 300 aaPredicted RBP13.18□□□□□ -0.3
LIG1-216ENST00000598938 EDA2RQ9HAV5 297 aa13.18□□□□□ -0.3
LIG1-216ENST00000598938 A0A1B0GV50 99 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 INSP01308 110 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 TSPOP30536 169 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 LEPP41159 167 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 ZFAND6Q6FIF0 208 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 C1orf158Q8N1D5 194 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 NKX6-2Q9C056 277 aaPredicted RBP13.17□□□□□ -0.3
LIG1-216ENST00000598938 ZNF492Q9P255 531 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 RPH3ALQ9UNE2 315 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 X6R8D5 127 aa13.17□□□□□ -0.3
LIG1-216ENST00000598938 TRAV12-2A0A075B6T6 113 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 SERTM2A0A1B0GWG4 89 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 TCRAP04437 139 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 ZNF138P52744 262 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 GOLT1AQ6ZVE7 132 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 EPDR1Q9UM22 224 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 GOLT1BQ9Y3E0 138 aa13.16□□□□□ -0.3
LIG1-216ENST00000598938 TRBV7-9A0A0J9YWB2 115 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 HBE1P02100 147 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 CRISP2P16562 243 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 PPT1P50897 306 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 KIR3DS1Q14943 382 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 CCDC28AQ8IWP9 274 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 NEU1Q99519 415 aa13.15□□□□□ -0.3
LIG1-216ENST00000598938 KLLNB2CW77 178 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 TEX46H3BTG2 121 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 NMBP08949 121 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 RBMY1A1P0DJD3 496 aaKnown RBP13.14□□□□□ -0.31
LIG1-216ENST00000598938 RBMY1CP0DJD4 496 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 MIFP14174 115 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 CCL20P78556 96 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 RBMY1FQ15415 496 aaKnown RBP13.14□□□□□ -0.31
LIG1-216ENST00000598938 GFI1BQ5VTD9 330 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 Q8NAQ8 132 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 Q8TAT8 98 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 ATG101Q9BSB4 218 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 LENEPQ9Y5L5 61 aa13.14□□□□□ -0.31
LIG1-216ENST00000598938 PAGE4O60829 102 aa13.13□□□□□ -0.31
LIG1-216ENST00000598938 ZFAND2AQ8N6M9 145 aa13.13□□□□□ -0.31
LIG1-216ENST00000598938 CYB561D1Q8N8Q1 229 aa13.13□□□□□ -0.31
LIG1-216ENST00000598938 C20orf144Q9BQM9 153 aa13.13□□□□□ -0.31
LIG1-216ENST00000598938 C11orf68Q9H3H3 251 aaKnown RBP13.13□□□□□ -0.31
LIG1-216ENST00000598938 IGHV3OR16-12A0A075B7B8 117 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 TRAV8-1A0A0A6YYK1 113 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 A0A0J9YWU9 116 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 SMIM9A6NGZ8 99 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 K7EQM0 130 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 IFNA7P01567 189 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 ATP5G3P48201 142 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 CST9LP1Q5W188 147 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 TMEM256Q8N2U0 113 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 TCEAL7Q9BRU2 100 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 MANBALQ9NQG1 85 aa13.12□□□□□ -0.31
LIG1-216ENST00000598938 IGHV4-28A0A0C4DH34 117 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 J3KRW8 73 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 PEX7O00628 323 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 BLOC1S1P78537 153 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 PMS2P11Q13670 270 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 PRR9Q5T870 116 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 TMEM75Q8N9X5 138 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 HIST1H2BAQ96A08 127 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 TMEM208Q9BTX3 173 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 GNG13Q9P2W3 67 aa13.11□□□□□ -0.31
LIG1-216ENST00000598938 C7orf71A4D174 169 aa13.1□□□□□ -0.31
LIG1-216ENST00000598938 IGLV2-11P01706 119 aa13.1□□□□□ -0.31
LIG1-216ENST00000598938 BTN1A1Q13410 526 aa13.1□□□□□ -0.31
LIG1-216ENST00000598938 TRAV12-3A0A0B4J271 114 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 FBLL1A6NHQ2 334 aaKnown RBP13.09□□□□□ -0.31
LIG1-216ENST00000598938 GPX1P07203 203 aa13.09□□□□□ -0.31
LIG1-216ENST00000598938 TEX261Q6UWH6 196 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms