RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 B2MP61769 119 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 DAD1P61803 113 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 NHLH2Q02577 135 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 BAXQ07812 192 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 RAB31Q13636 194 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 GFI1BQ5VTD9 330 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 C10orf113Q5VZT2 155 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 BPIFA4PQ86YQ2 179 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 SVBPQ8N300 66 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 SLC39A9Q9NUM3 307 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 UQCC1Q9NVA1 299 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 DNAH17Q9UFH2 4485 aa7.5□□□□□ -1.21
VRK3-214ENST00000598553 EIF3GO75821 320 aaKnown RBP eCLIP7.49□□□□□ -1.21
VRK3-214ENST00000598553 NDUFB4O95168 129 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 SEC11BP0C7V7 166 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 CT45A10P0DMU9 189 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 DEFB130BP0DP73 79 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 DEFB130AP0DP74 79 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 HTN1P15515 57 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 SULT1A1P50225 295 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 RPL7L1Q6DKI1 246 aaKnown RBP7.49□□□□□ -1.21
VRK3-214ENST00000598553 Q6ZQT7 251 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 STX12Q86Y82 276 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 TMEM256Q8N2U0 113 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 LINC01587Q99440 93 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 SLC25A31Q9H0C2 315 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 PPP1R14DQ9NXH3 145 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 PXMP4Q9Y6I8 212 aa7.49□□□□□ -1.21
VRK3-214ENST00000598553 LYRM9A8MSI8 78 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 CDKN1BP46527 198 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 HBG1P69891 147 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 HBG2P69892 147 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 ERCC8Q13216 396 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 BTN1A1Q13410 526 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 C10orf91Q5T1B1 145 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 Q6ZR54 194 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 Q6ZRG5 221 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.48□□□□□ -1.21
VRK3-214ENST00000598553 OR1L4Q8NGR5 311 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 RNASE8Q8TDE3 154 aaKnown RBP7.48□□□□□ -1.21
VRK3-214ENST00000598553 FAM167A-AS1Q96KT0 104 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 PFDN5Q99471 154 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 SLC25A2Q9BXI2 301 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 SEC11CQ9BY50 192 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 NKX6-2Q9C056 277 aaPredicted RBP7.48□□□□□ -1.21
VRK3-214ENST00000598553 DNAJC4Q9NNZ3 241 aa7.48□□□□□ -1.21
VRK3-214ENST00000598553 CARHSP1Q9Y2V2 147 aaKnown RBP7.48□□□□□ -1.21
VRK3-214ENST00000598553 LOC105371267A0A1B0GV96 52 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 SNAPINO95295 136 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 RPL29P47914 159 aaKnown RBP7.47□□□□□ -1.21
VRK3-214ENST00000598553 ZNF266Q14584 549 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 CLINT1Q14677 625 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 GUK1Q16774 197 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 PRR9Q5T870 116 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 MIR17HGQ75NE6 70 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 EXOC3-AS1Q8N2X6 119 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 NPCDR1Q9BY65 106 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 TREM1Q9NP99 234 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 PKHD1P08F94 4074 aa7.47□□□□□ -1.21
VRK3-214ENST00000598553 NPIPB6E9PJ23 425 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 F8W036 122 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 TAS2R60P59551 318 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 LINC00336Q6ZUF6 198 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 UBE2DNLQ8IWF7 75 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 OR5C1Q8NGR4 320 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 OR10J6PQ8NGY7 276 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 LYPD6BQ8NI32 183 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 ZNF503Q96F45 646 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 C16orf74Q96GX8 76 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 NOP10Q9NPE3 64 aaKnown RBP7.46□□□□□ -1.22
VRK3-214ENST00000598553 HERC2O95714 4834 aa7.46□□□□□ -1.22
VRK3-214ENST00000598553 DYNC1H1Q14204 4646 aaKnown RBP7.46□□□□□ -1.22
VRK3-214ENST00000598553 TRBV19A0A075B6N1 114 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 IGKV2-40A0A087WW87 121 aaPredicted RBP7.45□□□□□ -1.22
VRK3-214ENST00000598553 TRAV12-3A0A0B4J271 114 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 UMAD1C9J7I0 102 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 F5H768 121 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 ZNF253O75346 499 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 MPDU1O75352 247 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 IGKV2D-40P01614 121 aaPredicted RBP7.45□□□□□ -1.22
VRK3-214ENST00000598553 HOXA5P20719 270 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 PEA15Q15121 130 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 ATP6V1FQ16864 119 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 RNF212Q495C1 297 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 LINC00612Q8N6U2 182 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 C15orf53Q8NAA6 179 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 TMEM263Q8WUH6 116 aaKnown RBP7.45□□□□□ -1.22
VRK3-214ENST00000598553 BLNKQ8WV28 456 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 GNPNAT1Q96EK6 184 aaPredicted RBP7.45□□□□□ -1.22
VRK3-214ENST00000598553 C20orf144Q9BQM9 153 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 SMDT1Q9H4I9 107 aa7.45□□□□□ -1.22
VRK3-214ENST00000598553 MUC4Q99102 2169 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 PRSS29PA6NIE9 313 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 H7BYZ3 331 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 LGALS9BQ3B8N2 356 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 DPPA3Q6W0C5 159 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 ZNF493Q6ZR52 646 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 CLRN3Q8NCR9 226 aa7.44□□□□□ -1.22
VRK3-214ENST00000598553 MRPL53Q96EL3 112 aaKnown RBP7.44□□□□□ -1.22
VRK3-214ENST00000598553 FAM19A4Q96LR4 140 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms