RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CD3EP07766 207 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 HLA-DMBP28068 263 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 DLX6P56179 175 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 CACNG7P62955 275 aa12.05□□□□□ -0.48
UPF1-204ENST00000596842 NEU4Q8WWR8 484 aaPredicted RBP12.05□□□□□ -0.48
UPF1-204ENST00000596842 IGLV2-11P01706 119 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 C3orf56Q8N813 242 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 ZNF492Q9P255 531 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 INS-IGF2F8WCM5 200 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 CD300EQ496F6 205 aaPredicted RBP12.04□□□□□ -0.48
UPF1-204ENST00000596842 IGFL3Q6UXB1 125 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 PRELID3AQ96N28 172 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 NDFIP1Q9BT67 221 aa12.04□□□□□ -0.48
UPF1-204ENST00000596842 SOX21Q9Y651 276 aaPredicted RBP12.04□□□□□ -0.48
UPF1-204ENST00000596842 I3L2K1 104 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 CRIP1P50238 77 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 WFDC2Q14508 124 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 SHISA9B4DS77 424 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 CKS2P33552 79 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 BSNQ9UPA5 3926 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 H3BMG7 143 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 C3orf36Q3SXR2 165 aa12.03□□□□□ -0.48
UPF1-204ENST00000596842 K7EIM0 57 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 HAX1O00165 279 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 RHOGP84095 191 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 CT83Q5H943 113 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 PET117Q6UWS5 81 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 ZNF491Q8N8L2 437 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 UFC1Q9Y3C8 167 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 CREBBPQ92793 2442 aa12.02□□□□□ -0.48
UPF1-204ENST00000596842 IGLV1-47P01700 117 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 CHD8Q9HCK8 2581 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 C9orf118A6NHY6 69 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 J3KRW8 73 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 K7EP34 96 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 SCGB1C2P0DMR2 95 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 APOBEC3AP31941 199 aaPredicted RBP12.02□□□□□ -0.49
UPF1-204ENST00000596842 SIGLEC15Q6ZMC9 328 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 SHANK2-AS3Q9BTD1 123 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 RABAC1Q9UI14 185 aa12.02□□□□□ -0.49
UPF1-204ENST00000596842 EVI2AP22794 236 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 NPFFR1Q9GZQ6 430 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 GFRA4Q9GZZ7 299 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 ZNF747Q9BV97 191 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 NOTCH3Q9UM47 2321 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 SEC11AP67812 179 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 SCRT2Q9NQ03 307 aa12.01□□□□□ -0.49
UPF1-204ENST00000596842 ZNF785A8K8V0 405 aa12□□□□□ -0.49
UPF1-204ENST00000596842 SH2D1AO60880 128 aa12□□□□□ -0.49
UPF1-204ENST00000596842 SIGLEC8Q9NYZ4 499 aa12□□□□□ -0.49
UPF1-204ENST00000596842 MSRB1Q9NZV6 116 aa12□□□□□ -0.49
UPF1-204ENST00000596842 TRBV20-1A0A075B6N2 111 aa12□□□□□ -0.49
UPF1-204ENST00000596842 SHISA2Q6UWI4 295 aa12□□□□□ -0.49
UPF1-204ENST00000596842 C1orf122Q6ZSJ8 110 aa12□□□□□ -0.49
UPF1-204ENST00000596842 OR5A1Q8NGJ0 315 aa12□□□□□ -0.49
UPF1-204ENST00000596842 NBR2O15453 112 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 APOMO95445 188 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 ZNF414Q96IQ9 312 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 MRAP2Q96G30 205 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 TTTY13Q9BZ97 58 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 ECSCRQ19T08 205 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 ZNF672Q499Z4 452 aaPredicted RBP11.99□□□□□ -0.49
UPF1-204ENST00000596842 SYT8Q8NBV8 401 aa11.99□□□□□ -0.49
UPF1-204ENST00000596842 VGLL1Q99990 258 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 SPTBN4Q9H254 2564 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 CRYGBP07316 175 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 ERCC8Q13216 396 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 TTC32Q5I0X7 151 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 ORMDL3Q8N138 153 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 DPM3Q9P2X0 92 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 H3BRN7 92 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 CRXO43186 299 aaPredicted RBP11.98□□□□□ -0.49
UPF1-204ENST00000596842 JMJD8Q96S16 334 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 KAAG1Q9UBP8 84 aa11.98□□□□□ -0.49
UPF1-204ENST00000596842 B9A039 149 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 FOXC1Q12948 553 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 RNF183Q96D59 192 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 NPIPB6E9PJ23 425 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 MFAP4P55083 255 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 COL25A1Q9BXS0 654 aaPredicted RBP11.97□□□□□ -0.49
UPF1-204ENST00000596842 C1RLQ9NZP8 487 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 A0A1W2PPM0 123 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 TNFRSF13BO14836 293 aaPredicted RBP11.97□□□□□ -0.49
UPF1-204ENST00000596842 NPYP01303 97 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 RNF182Q8N6D2 247 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 C21orf62Q9NYP8 219 aa11.97□□□□□ -0.49
UPF1-204ENST00000596842 MRPL51Q4U2R6 128 aaKnown RBP11.96□□□□□ -0.49
UPF1-204ENST00000596842 PCP2Q8IVA1 136 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 Q8NA96 180 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 H7C2G1 150 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 GAS8-AS1O95177 125 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 EGR2P11161 476 aaPredicted RBP11.96□□□□□ -0.49
UPF1-204ENST00000596842 GATA1P15976 413 aaPredicted RBP11.96□□□□□ -0.49
UPF1-204ENST00000596842 LINC01545Q5VT33 79 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 HIST1H4GQ99525 98 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 TMEM14CQ9P0S9 112 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 DKK2Q9UBU2 259 aa11.96□□□□□ -0.49
UPF1-204ENST00000596842 GAGE13Q4V321 117 aa11.96□□□□□ -0.5
UPF1-204ENST00000596842 CCDC144NLQ6NUI1 221 aa11.96□□□□□ -0.5
UPF1-204ENST00000596842 COX8AP10176 69 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms