RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 ATP5SQ99766 215 aa10.28□□□□□ -0.76
PNKP-202ENST00000593706 MBD2Q9UBB5 411 aa10.28□□□□□ -0.76
PNKP-202ENST00000593706 HSPB11Q9Y547 144 aa10.28□□□□□ -0.76
PNKP-202ENST00000593706 ALG5Q9Y673 324 aa10.28□□□□□ -0.76
PNKP-202ENST00000593706 NPIPB6E9PJ23 425 aa10.27□□□□□ -0.77
PNKP-202ENST00000593706 PET100P0DJ07 73 aa10.27□□□□□ -0.77
PNKP-202ENST00000593706 PYYP10082 97 aa10.27□□□□□ -0.77
PNKP-202ENST00000593706 OR5I1Q13606 314 aa10.27□□□□□ -0.77
PNKP-202ENST00000593706 KIR3DS1Q14943 382 aa10.27□□□□□ -0.77
PNKP-202ENST00000593706 RNASE8Q8TDE3 154 aaKnown RBP10.27□□□□□ -0.77
PNKP-202ENST00000593706 GNPNAT1Q96EK6 184 aaPredicted RBP10.27□□□□□ -0.77
PNKP-202ENST00000593706 MRPL53Q96EL3 112 aaKnown RBP10.27□□□□□ -0.77
PNKP-202ENST00000593706 TRAV26-1A0A087WT03 109 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 H7BYZ3 331 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 HIST1H1EP10412 219 aaKnown RBP10.26□□□□□ -0.77
PNKP-202ENST00000593706 PDE6HQ13956 83 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 MIR17HGQ75NE6 70 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 ODF3Q96PU9 254 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 Q9H8V8 135 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 KCNIP2Q9NS61 270 aa10.26□□□□□ -0.77
PNKP-202ENST00000593706 A0A0J9YY99 117 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 M0R3E3 92 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 CT45A10P0DMU9 189 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 M6PRP20645 277 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 RPL12P30050 165 aaKnown RBP10.25□□□□□ -0.77
PNKP-202ENST00000593706 Q8N1X5 172 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 PARD6GQ9BYG4 376 aaPredicted RBP10.25□□□□□ -0.77
PNKP-202ENST00000593706 WFDC1Q9HC57 220 aa10.25□□□□□ -0.77
PNKP-202ENST00000593706 SNURFLB1AK76 121 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 GFI1BQ5VTD9 330 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 CCDC28AQ8IWP9 274 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 FXYD5Q96DB9 178 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 ZNF503Q96F45 646 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 FAM19A4Q96LR4 140 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 C20orf144Q9BQM9 153 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 MRPL32Q9BYC8 188 aaKnown RBP10.24□□□□□ -0.77
PNKP-202ENST00000593706 KRTAP1-5Q9BYS1 174 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 Q9H3A6 140 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 SCRT2Q9NQ03 307 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 FUT9Q9Y231 359 aa10.24□□□□□ -0.77
PNKP-202ENST00000593706 GAGE12BA1L429 117 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 GAGE7O76087 117 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 GAGE12FP0CL80 117 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 GAGE12GP0CL81 117 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 GAGE12IP0CL82 117 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 EXOC3-AS1Q8N2X6 119 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 RXFP4Q8TDU9 374 aa10.23□□□□□ -0.77
PNKP-202ENST00000593706 J3KRW8 73 aa10.22□□□□□ -0.77
PNKP-202ENST00000593706 SMIM3Q9BZL3 60 aa10.22□□□□□ -0.77
PNKP-202ENST00000593706 PRELID1Q9Y255 219 aa10.22□□□□□ -0.77
PNKP-202ENST00000593706 C17orf112F2Z3M2 114 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 NBEAP1P0C6P0 100 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 HOXA5P20719 270 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 BLNKQ8WV28 456 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 PHYHIPLQ96FC7 376 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 UPK3BQ9BT76 320 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 OR51M1Q9H341 326 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 TIMM9Q9Y5J7 89 aa10.21□□□□□ -0.77
PNKP-202ENST00000593706 HERC1Q15751 4861 aa10.21□□□□□ -0.78
PNKP-202ENST00000593706 A0A1W2PPQ1 181 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 KLLNB2CW77 178 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 OR10J4P0C629 311 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 LEPP41159 167 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 KRTAP10-2P60368 255 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 ERCC8Q13216 396 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 ICAM4Q14773 271 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 FFAR4Q5NUL3 377 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 C9orf47Q6ZRZ4 202 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 LINC00612Q8N6U2 182 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 PAXXQ9BUH6 204 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 AGPAT4-IT1Q9H0P7 198 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 TMPRSS5Q9H3S3 457 aa10.2□□□□□ -0.78
PNKP-202ENST00000593706 DMBT1Q9UGM3 2413 aaPredicted RBP10.2□□□□□ -0.78
PNKP-202ENST00000593706 MRPS16Q9Y3D3 137 aaKnown RBP10.2□□□□□ -0.78
PNKP-202ENST00000593706 IGKV2-40A0A087WW87 121 aaPredicted RBP10.19□□□□□ -0.78
PNKP-202ENST00000593706 TRAV12-3A0A0B4J271 114 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 H3BNG1 76 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 IFNA5P01569 189 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 IGKV2D-40P01614 121 aaPredicted RBP10.19□□□□□ -0.78
PNKP-202ENST00000593706 CRISP2P16562 243 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 ESRGQ1W209 222 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 Q5BKY6 102 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 AQP10Q96PS8 301 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 MED28Q9H204 178 aa10.19□□□□□ -0.78
PNKP-202ENST00000593706 BTF3P20290 206 aaKnown RBP10.18□□□□□ -0.78
PNKP-202ENST00000593706 ZFAND2AQ8N6M9 145 aa10.18□□□□□ -0.78
PNKP-202ENST00000593706 SCGB1C1Q8TD33 95 aa10.18□□□□□ -0.78
PNKP-202ENST00000593706 LINC00477Q96M19 166 aa10.18□□□□□ -0.78
PNKP-202ENST00000593706 VGLL1Q99990 258 aa10.18□□□□□ -0.78
PNKP-202ENST00000593706 AAMDCQ9H7C9 122 aa10.18□□□□□ -0.78
PNKP-202ENST00000593706 TRGV2A0A075B6R0 118 aa10.17□□□□□ -0.78
PNKP-202ENST00000593706 C7orf71A4D174 169 aa10.17□□□□□ -0.78
PNKP-202ENST00000593706 OR7C2O60412 319 aa10.17□□□□□ -0.78
PNKP-202ENST00000593706 ZNF324O75467 553 aaPredicted RBP10.17□□□□□ -0.78
PNKP-202ENST00000593706 SLC25A5P05141 298 aaKnown RBP10.17□□□□□ -0.78
PNKP-202ENST00000593706 GIPP09681 153 aaPredicted RBP10.17□□□□□ -0.78
PNKP-202ENST00000593706 LINC00315P59091 139 aa10.17□□□□□ -0.78
PNKP-202ENST00000593706 UBE2L3P68036 154 aaKnown RBP10.17□□□□□ -0.78
PNKP-202ENST00000593706 RGS21Q2M5E4 152 aa10.17□□□□□ -0.78
PNKP-202ENST00000593706 KHDC3LQ587J8 217 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms