RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 IGLC3P0DOY3 106 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 CLEC19AQ6UXS0 136 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 ATOH7Q8N100 152 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 EEF1AKMT3Q96AZ1 226 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 TMEM70Q9BUB7 260 aa7.8□□□□□ -1.16
VPS53-220ENST00000576149 TRBV7-1A0A0A6YYK4 115 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 CRXO43186 299 aaPredicted RBP7.79□□□□□ -1.16
VPS53-220ENST00000576149 LYZL1Q6UWQ5 148 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 KLHDC1Q8N7A1 406 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 Q8TAT8 98 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 CSTL1Q9H114 145 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 UQCR10Q9UDW1 63 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 TMSB15BA0A087X1C1 80 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 IGHV1-69DA0A0B4J2H0 117 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 LEPROTL1O95214 131 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 IGHV1-69P01742 117 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 OR5AL1P0C617 328 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 ZNF80P51504 273 aaPredicted RBP7.79□□□□□ -1.16
VPS53-220ENST00000576149 ZNF138P52744 262 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 ERASQ7Z444 233 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 SPATA12Q7Z6I5 190 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 TMEM219Q86XT9 240 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 PIFOQ8TCI5 191 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 MOB4Q9Y3A3 225 aa7.79□□□□□ -1.16
VPS53-220ENST00000576149 IGHV3OR16-10A0A075B7F0 116 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 TRAV9-2A0A087WT02 112 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 IGHV4-61A0A0C4DH41 118 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 GAGE1Q13065 139 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 C19orf54Q5BKX5 351 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 SYS1-DBNDD2H3BUS1 97 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 RPS20P60866 119 aaKnown RBP7.78□□□□□ -1.16
VPS53-220ENST00000576149 LINC00173Q6ZV60 143 aa7.78□□□□□ -1.16
VPS53-220ENST00000576149 ITPR1Q14643 2758 aa7.77□□□□□ -1.16
VPS53-220ENST00000576149 TRAV41A0A0B4J266 112 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 C20orf202A1L168 122 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 TMEM213A2RRL7 107 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 PRAC2D3DTV9 90 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 CSN3P07498 182 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 CRIP2P52943 208 aaPredicted RBP7.77□□□□□ -1.17
VPS53-220ENST00000576149 ATP5G2Q06055 141 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 ZNF575Q86XF7 245 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 C10orf105Q8TEF2 133 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 CCL19Q99731 98 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 SLC50A1Q9BRV3 221 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 MEGF9Q9H1U4 602 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 YAE1D1Q9NRH1 226 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 IGHV3-66A0A0C4DH42 116 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 RBAKDNA6NC62 111 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 PPBPP02775 128 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 BRD3OSQ6XYD6 125 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 METTL26Q96S19 204 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 U3KQE9 123 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 U3KQK5 164 aa7.77□□□□□ -1.17
VPS53-220ENST00000576149 ASH1LQ9NR48 2969 aaKnown RBP7.76□□□□□ -1.17
VPS53-220ENST00000576149 TRAV40A0A0B4J280 105 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 WIPF1O43516 503 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 IGLC6P0CF74 106 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 ERCC8Q13216 396 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 FAM104BQ5XKR9 115 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 Q6ZN92 141 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 RNF182Q8N6D2 247 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 FER1L6-AS1Q8NA97 138 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 PSMG3-AS1Q96PY0 264 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 AP5S1Q9NUS5 200 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 FAM223BA6NKX1 122 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 FABP5P3A8MUU1 101 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 DLEU1O43261 78 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 RPLP1P05386 114 aaKnown RBP7.76□□□□□ -1.17
VPS53-220ENST00000576149 IGLL1P15814 213 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 FAM223AQ8IWN6 122 aa7.76□□□□□ -1.17
VPS53-220ENST00000576149 IGHV3OR16-13A0A075B7E8 117 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 IGHV3-74A0A0B4J1X5 117 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 OR4C46A6NHA9 309 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 D6R8Y8 96 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 SNAI2O43623 268 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 HNRNPA3P51991 378 aaKnown RBP7.75□□□□□ -1.17
VPS53-220ENST00000576149 AMN1Q8IY45 258 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 PRSS3P2Q8NHM4 247 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 MAP1LC3CQ9BXW4 147 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 LINC00527Q9UJ94 153 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 HSPB8Q9UJY1 196 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 AKAP6Q13023 2319 aa7.75□□□□□ -1.17
VPS53-220ENST00000576149 TRAV8-2A0A0B4J237 113 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 MUC21A0A0G2JKD1 596 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 MUC21A0A140T8X8 626 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 ZNF207O43670 478 aaKnown RBP7.74□□□□□ -1.17
VPS53-220ENST00000576149 IGHV4-38-2P0DP08 117 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 MUC21Q5SSG8 566 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 FA2HQ7L5A8 372 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 IGHV3-49A0A0A0MS15 119 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 ORM1P02763 201 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 TRGV3P03979 118 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 IGF1P05019 195 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 TWIST1Q15672 202 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 LINC01559Q495D7 138 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 MRPL51Q4U2R6 128 aaKnown RBP7.74□□□□□ -1.17
VPS53-220ENST00000576149 ORMDL3Q8N138 153 aa7.74□□□□□ -1.17
VPS53-220ENST00000576149 MRPL53Q96EL3 112 aaKnown RBP7.74□□□□□ -1.17
VPS53-220ENST00000576149 AGPAT4-IT1Q9H0P7 198 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms