RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ZNRF2Q8NHG8 242 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 ZNF418Q8TF45 676 aaPredicted RBP5.2□□□□□ -1.58
VPS53-217ENST00000575100 CLEC7AQ9BXN2 247 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 GNB4Q9HAV0 340 aa5.2□□□□□ -1.58
VPS53-217ENST00000575100 IGHV3OR16-13A0A075B7E8 117 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 IGHV3OR16-9A0A0B4J2B5 98 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 IFITM10A6NMD0 228 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 SNRPGP15A8MWD9 76 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 B4DSR2 109 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 H0Y9J4 135 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 BUB1B-PAK6H3BSN5 160 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 M0R1X1 148 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 CREBL2O60519 120 aaPredicted RBP5.19□□□□□ -1.58
VPS53-217ENST00000575100 DUS4LO95620 317 aaKnown RBP5.19□□□□□ -1.58
VPS53-217ENST00000575100 IGKV1-16P04430 117 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 OR5G3P0C626 314 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 H2BFSP57053 126 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 CACNG7P62955 275 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 HBG1P69891 147 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 HBG2P69892 147 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 ZNF833PQ6ZTB9 187 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 NOTCH2NLQ7Z3S9 236 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 LYZL2Q7Z4W2 148 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 SGPP2Q8IWX5 399 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 LINC00311Q8N616 119 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 OR11H6Q8NGC7 330 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 DDB2Q92466 427 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 MRPL20Q9BYC9 149 aaKnown RBP5.19□□□□□ -1.58
VPS53-217ENST00000575100 TMEM222Q9H0R3 208 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 GTSF1LQ9H1H1 148 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 COX11Q9Y6N1 276 aa5.19□□□□□ -1.58
VPS53-217ENST00000575100 IGHV3-72A0A0B4J1Y9 119 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 LY6LH3BQJ8 138 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 SNAPC5O75971 98 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 MT-ND4LP03901 98 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 IGLL1P15814 213 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 ZNF137PP52743 207 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 ZNF816Q0VGE8 651 aaPredicted RBP5.18□□□□□ -1.58
VPS53-217ENST00000575100 BRD3OSQ6XYD6 125 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 SLC35G3Q8N808 338 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 VN1R17PQ8TDU5 208 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 LINC00477Q96M19 166 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 KRTAP9-9Q9BYP9 154 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 NAT8Q9UHE5 227 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 TRAV40A0A0B4J280 105 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 CXCL2P19875 107 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 CD24P25063 80 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 SRP14P37108 136 aaKnown RBP5.18□□□□□ -1.58
VPS53-217ENST00000575100 KIAA1644Q3SXP7 199 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 C1orf194Q5T5A4 169 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 FAM71E2Q8N5Q1 922 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 SGMS2Q8NHU3 365 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 NABP2Q9BQ15 211 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 MED28Q9H204 178 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 NAT8BQ9UHF3 227 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 HILPDAQ9Y5L2 63 aa5.18□□□□□ -1.58
VPS53-217ENST00000575100 G3V3Q6 166 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 ZNF207O43670 478 aaKnown RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 IGKV1-5P01602 117 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 PFN1P07737 140 aaKnown RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 HSPE1P61604 102 aaKnown RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 MSMO1Q15800 293 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 IAH1Q2TAA2 248 aaPredicted RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 SPATA31B1PQ5VZV4 182 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 PRSS3P2Q8NHM4 247 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 METTL26Q96S19 204 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 HSD17B10Q99714 261 aaKnown RBP5.17□□□□□ -1.58
VPS53-217ENST00000575100 TENM1Q9UKZ4 2725 aa5.17□□□□□ -1.58
VPS53-217ENST00000575100 BORCS7-ASMTA0A0B4J1R7 106 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 IGHV1-3A0A0C4DH29 117 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 TEX50A0A1B0GTY4 177 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 DNAJC9-AS1A6NH13 148 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 C8orf87E5RJ46 101 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 H0YJW9 148 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 AGPAT2O15120 278 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 KRASP01116 189 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 G6PCP35575 357 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 LPAR6P43657 344 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 AKR1C2P52895 323 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 TRPT1Q86TN4 253 aaKnown RBP5.16□□□□□ -1.58
VPS53-217ENST00000575100 FAM24BQ8N5W8 94 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 OR2K2Q8NGT1 345 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 TAF15Q92804 592 aaKnown RBP eCLIP5.16□□□□□ -1.58
VPS53-217ENST00000575100 MRPL27Q9P0M9 148 aaKnown RBP5.16□□□□□ -1.58
VPS53-217ENST00000575100 DPM3Q9P2X0 92 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 TRAV3A0A0B4J244 114 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 KRTAP4-8A0A0G2JLE6 195 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 FABP5P3A8MUU1 101 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 NPFFO15130 113 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 RPL7P18124 248 aaKnown RBP5.16□□□□□ -1.58
VPS53-217ENST00000575100 VDAC1P21796 283 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 CNTFRP26992 372 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 RPS28P62857 69 aaKnown RBP5.16□□□□□ -1.58
VPS53-217ENST00000575100 PMAIP1Q13794 54 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 NMSQ5H8A3 153 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 C11orf87Q6NUJ2 197 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 TEX29Q8N6K0 151 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 BORCS7Q96B45 105 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms