RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 ZNF767PQ75MW2 155 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 CYB561D1Q8N8Q1 229 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 HIST1H2BAQ96A08 127 aa12.53□□□□□ -0.4
NUP88-210ENST00000574867 BCL2P10415 239 aa12.52□□□□□ -0.4
NUP88-210ENST00000574867 ATP5G3P48201 142 aa12.52□□□□□ -0.4
NUP88-210ENST00000574867 SBSPONQ8IVN8 264 aa12.52□□□□□ -0.4
NUP88-210ENST00000574867 AGPAT4-IT1Q9H0P7 198 aa12.52□□□□□ -0.4
NUP88-210ENST00000574867 C11orf94C9JXX5 98 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 F6UZH7 168 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 ERCC8Q13216 396 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 Q6ZWC4 215 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 VGLL1Q99990 258 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 SLC35B3Q9H1N7 401 aa12.52□□□□□ -0.41
NUP88-210ENST00000574867 FBLL1A6NHQ2 334 aaKnown RBP12.51□□□□□ -0.41
NUP88-210ENST00000574867 PEX7O00628 323 aa12.51□□□□□ -0.41
NUP88-210ENST00000574867 TSPOP30536 169 aa12.51□□□□□ -0.41
NUP88-210ENST00000574867 TRBV7-9A0A0J9YWB2 115 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 NMBP08949 121 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 CT45A10P0DMU9 189 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 LEPP41159 167 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 ZNF138P52744 262 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 MEF2BQ02080 365 aaPredicted RBP12.5□□□□□ -0.41
NUP88-210ENST00000574867 ZNF492Q9P255 531 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 GIG44P09565 113 aaPredicted RBP12.5□□□□□ -0.41
NUP88-210ENST00000574867 CDKN1BP46527 198 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 RAB14P61106 215 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 SPINK13Q1W4C9 94 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 TMEM75Q8N9X5 138 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 TM2D3Q9BRN9 247 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 VAX2Q9UIW0 290 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 LENEPQ9Y5L5 61 aa12.5□□□□□ -0.41
NUP88-210ENST00000574867 FAM19A4Q96LR4 140 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 ASCL2Q99929 193 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 SPATA25Q9BR10 227 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 TP53TG1Q9Y2A0 90 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 M0R2Z0 102 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 FXYD7P58549 80 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 IFITM2Q01629 132 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 XCL2Q9UBD3 114 aa12.49□□□□□ -0.41
NUP88-210ENST00000574867 LOC102723971A0A1B0GUV8 181 aa12.48□□□□□ -0.41
NUP88-210ENST00000574867 NHLRC4P0CG21 123 aaPredicted RBP12.48□□□□□ -0.41
NUP88-210ENST00000574867 CRISP2P16562 243 aa12.48□□□□□ -0.41
NUP88-210ENST00000574867 DEFB135Q30KP9 77 aa12.48□□□□□ -0.41
NUP88-210ENST00000574867 Q8TAT8 98 aa12.48□□□□□ -0.41
NUP88-210ENST00000574867 PCNPQ8WW12 178 aaKnown RBP12.48□□□□□ -0.41
NUP88-210ENST00000574867 ZMAT4Q9H898 229 aa12.48□□□□□ -0.41
NUP88-210ENST00000574867 TRAV8-1A0A0A6YYK1 113 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 PDE6DO43924 150 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 INSP01308 110 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 IGF2BP2-AS1Q96M15 143 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 RCHY1Q96PM5 261 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 RBFOX3A6NFN3 312 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 AKR1C3P42330 323 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 FLI1Q01543 452 aaPredicted RBP12.47□□□□□ -0.41
NUP88-210ENST00000574867 CSNK1G2-AS1Q8NCQ2 148 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 C11orf52Q96A22 123 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 RNF183Q96D59 192 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 FMC1Q96HJ9 113 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 NDFIP1Q9BT67 221 aa12.47□□□□□ -0.41
NUP88-210ENST00000574867 PRKDCP78527 4128 aaKnown RBP12.46□□□□□ -0.41
NUP88-210ENST00000574867 SCO2A0A1W2PP80 73 aa12.46□□□□□ -0.41
NUP88-210ENST00000574867 PSG8Q9UQ74 426 aa12.46□□□□□ -0.41
NUP88-210ENST00000574867 KLLNB2CW77 178 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 CRXO43186 299 aaPredicted RBP12.46□□□□□ -0.42
NUP88-210ENST00000574867 SPRY2O43597 315 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 IGLV2-11P01706 119 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 UBE2G1P62253 170 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 ZNF506Q5JVG8 444 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 C2CD4CQ8TF44 421 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 C20orf144Q9BQM9 153 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 KLF12Q9Y4X4 402 aa12.46□□□□□ -0.42
NUP88-210ENST00000574867 TRAV12-2A0A075B6T6 113 aa12.45□□□□□ -0.42
NUP88-210ENST00000574867 S100A9P06702 114 aaKnown RBP12.45□□□□□ -0.42
NUP88-210ENST00000574867 TMEM183BQ1AE95 376 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 TOR2AQ5JU69 321 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 CLLU1Q5K131 121 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 GFI1BQ5VTD9 330 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 Q86TA4 180 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 ZFAND2AQ8N6M9 145 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 SGK494Q96LW2 274 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 LINC00479Q96M42 142 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 GOLT1BQ9Y3E0 138 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 TRBV6-1A0A0K0K1D8 114 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 NDUFS6O75380 124 aaKnown RBP12.44□□□□□ -0.42
NUP88-210ENST00000574867 GPX1P07203 203 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 SAPCD1Q5SSQ6 148 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 PRNTQ86SH4 94 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 RARRES2Q99969 163 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 OVOL2Q9BRP0 275 aa12.44□□□□□ -0.42
NUP88-210ENST00000574867 EIF5A2Q9GZV4 153 aaKnown RBP12.44□□□□□ -0.42
NUP88-210ENST00000574867 TRAV34A0A0B4J273 112 aa12.43□□□□□ -0.42
NUP88-210ENST00000574867 TMEM256Q8N2U0 113 aa12.43□□□□□ -0.42
NUP88-210ENST00000574867 RETNQ9HD89 108 aa12.43□□□□□ -0.42
NUP88-210ENST00000574867 TREM1Q9NP99 234 aa12.43□□□□□ -0.42
NUP88-210ENST00000574867 C7orf71A4D174 169 aa12.42□□□□□ -0.42
NUP88-210ENST00000574867 J3KRW8 73 aa12.42□□□□□ -0.42
NUP88-210ENST00000574867 RGS13O14921 159 aa12.42□□□□□ -0.42
NUP88-210ENST00000574867 ZNF705AQ6ZN79 300 aaPredicted RBP12.42□□□□□ -0.42
NUP88-210ENST00000574867 TMEM250H0YL14 139 aa12.42□□□□□ -0.42
NUP88-210ENST00000574867 TMEM208Q9BTX3 173 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms