RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 VPS25Q9BRG1 176 aa12.15□□□□□ -0.46
NUP88-207ENST00000573584 DKK2Q9UBU2 259 aa12.15□□□□□ -0.46
NUP88-207ENST00000573584 C18orf15Q96N68 181 aa12.15□□□□□ -0.46
NUP88-207ENST00000573584 RELNP78509 3460 aa12.15□□□□□ -0.46
NUP88-207ENST00000573584 FABP5P3A8MUU1 101 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 H3BRM9 83 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 HSD52Q0P140 79 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 PCP2Q8IVA1 136 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 RNF185Q96GF1 192 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 MAP1LC3AQ9H492 121 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 TLN1Q9Y490 2541 aaKnown RBP12.14□□□□□ -0.47
NUP88-207ENST00000573584 SIVA1O15304 175 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 TCF15Q12870 199 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 ERCC8Q13216 396 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 VMO1Q7Z5L0 202 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 C9orf118A6NHY6 69 aa12.14□□□□□ -0.47
NUP88-207ENST00000573584 GAS8-AS1O95177 125 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 ADAMTSL5Q6ZMM2 481 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 Q8N6K4 173 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 OR4X2Q8NGF9 303 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 COL25A1Q9BXS0 654 aaPredicted RBP12.13□□□□□ -0.47
NUP88-207ENST00000573584 H3BUT2 72 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 TMEM11P17152 192 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 KIR3DS1Q14943 382 aa12.13□□□□□ -0.47
NUP88-207ENST00000573584 LEPP41159 167 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 SRSF2Q01130 221 aaKnown RBP12.12□□□□□ -0.47
NUP88-207ENST00000573584 GTF2H5Q6ZYL4 71 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 CNFNQ9BYD5 112 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 IGHV7-81A0A0B4J1V7 117 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 PRAC2D3DTV9 90 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 PPIFP30405 207 aaKnown RBP12.12□□□□□ -0.47
NUP88-207ENST00000573584 S100A7P31151 101 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 NAA38Q9BRA0 125 aaKnown RBP12.12□□□□□ -0.47
NUP88-207ENST00000573584 NPFFR1Q9GZQ6 430 aa12.12□□□□□ -0.47
NUP88-207ENST00000573584 WNK2Q9Y3S1 2297 aa12.11□□□□□ -0.47
NUP88-207ENST00000573584 K7ERU9 68 aa12.11□□□□□ -0.47
NUP88-207ENST00000573584 TNFRSF6BO95407 300 aa12.11□□□□□ -0.47
NUP88-207ENST00000573584 JMJD8Q96S16 334 aa12.11□□□□□ -0.47
NUP88-207ENST00000573584 EVI2AP22794 236 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 COTL1Q14019 142 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 FBXL19-AS1Q494R0 122 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 UFSP1Q6NVU6 142 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 RNF182Q8N6D2 247 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 RAB37Q96AX2 223 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 PSMG3-AS1Q96PY0 264 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 SELENOKQ9Y6D0 94 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 A0A0G2JLM5 398 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 FCER1GP30273 86 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 EBI3Q14213 229 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 C15orf32Q32M92 178 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 NXT2Q9NPJ8 142 aaKnown RBP12.1□□□□□ -0.47
NUP88-207ENST00000573584 OOSP1A8MZH6 123 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 LINC01559Q495D7 138 aa12.1□□□□□ -0.47
NUP88-207ENST00000573584 SVEP1Q4LDE5 3571 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 LINC01546A6NGU7 62 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 CLEC3BP05452 202 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 PRSS1P07477 247 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 GATA1P15976 413 aaPredicted RBP12.09□□□□□ -0.47
NUP88-207ENST00000573584 IL17RELQ6ZVW7 336 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 IGHV3-66A0A0C4DH42 116 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 CCL21O00585 134 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 BUB3O43684 328 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 C1orf122Q6ZSJ8 110 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 MSRB2Q9Y3D2 182 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 CEP295Q9C0D2 2601 aa12.09□□□□□ -0.47
NUP88-207ENST00000573584 ODF1Q14990 250 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 MINOS1Q5TGZ0 78 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 DTX2Q86UW9 622 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 Q8N9W7 124 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 MINOS1-NBL1R4GNA1 71 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 K7ENP7 123 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 ECSCRQ19T08 205 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 ZNF502Q8TBZ5 544 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 HHLA3Q9XRX5 114 aa12.08□□□□□ -0.48
NUP88-207ENST00000573584 ASH1LQ9NR48 2969 aaKnown RBP12.08□□□□□ -0.48
NUP88-207ENST00000573584 CDSNQ15517 529 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 OR2K2Q8NGT1 345 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 ZFAND3Q9H8U3 227 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 SPTA1P02549 2419 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 IGKV2D-26A0A0A0MRZ7 120 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 K7EP34 96 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 RAB9AP51151 201 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 TM4SF20Q53R12 229 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 PIFOQ8TCI5 191 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 ZMAT4Q9H898 229 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 IGHV3OR16-13A0A075B7E8 117 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 IGHV3-74A0A0B4J1X5 117 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 IGKV3D-20A0A0C4DH25 116 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 ZFP36P26651 326 aaKnown RBP12.07□□□□□ -0.48
NUP88-207ENST00000573584 SMIM15Q7Z3B0 74 aa12.07□□□□□ -0.48
NUP88-207ENST00000573584 RBAKDNA6NC62 111 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 SAP30O75446 220 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 GOSR1O95249 250 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 PSMG4Q5JS54 123 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 FAM110DQ8TAY7 271 aaPredicted RBP12.06□□□□□ -0.48
NUP88-207ENST00000573584 TMEM158Q8WZ71 300 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 AGPAT4-IT1Q9H0P7 198 aa12.06□□□□□ -0.48
NUP88-207ENST00000573584 PTPRZ1P23471 2315 aaPredicted RBP12.06□□□□□ -0.48
NUP88-207ENST00000573584 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms