RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 DAD1P61803 113 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 GCSAMLQ5JQS6 135 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 FFAR4Q5NUL3 377 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 RPP25LQ8N5L8 163 aaKnown RBP5.8□□□□□ -1.48
VPS53-214ENST00000572607 BLNKQ8WV28 456 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 ASB13Q8WXK3 278 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 SAT2Q96F10 170 aaPredicted RBP5.8□□□□□ -1.48
VPS53-214ENST00000572607 C20orf144Q9BQM9 153 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 NDUFAF3Q9BU61 184 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 PAXXQ9BUH6 204 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 RNF126Q9BV68 326 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 SLC25A2Q9BXI2 301 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 OR51M1Q9H341 326 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 DKK2Q9UBU2 259 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 FUT9Q9Y231 359 aa5.8□□□□□ -1.48
VPS53-214ENST00000572607 LYRM9A8MSI8 78 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 PRAC2D3DTV9 90 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 NBEAP1P0C6P0 100 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 PRB4P10163 310 aaPredicted RBP5.79□□□□□ -1.48
VPS53-214ENST00000572607 HTN3P15516 51 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 CSN1S1P47710 185 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 ZNF266Q14584 549 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 OXA1LQ15070 435 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 FCN2Q15485 313 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 RGS21Q2M5E4 152 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 ACOT6Q3I5F7 207 aaPredicted RBP5.79□□□□□ -1.48
VPS53-214ENST00000572607 KHDC3LQ587J8 217 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 MIR17HGQ75NE6 70 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 CCDC28AQ8IWP9 274 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 C16orf74Q96GX8 76 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 FAM210BQ96KR6 192 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 ODF3Q96PU9 254 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 APLNQ9ULZ1 77 aa5.79□□□□□ -1.48
VPS53-214ENST00000572607 DYNC1H1Q14204 4646 aaKnown RBP5.79□□□□□ -1.48
VPS53-214ENST00000572607 FAT2Q9NYQ8 4349 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 J3KRW8 73 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 M0R3E3 92 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 OR10J4P0C629 311 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 UBE2L3P68036 154 aaKnown RBP5.78□□□□□ -1.48
VPS53-214ENST00000572607 ICAM4Q14773 271 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 TMEM78Q5T7P6 136 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 GFI1BQ5VTD9 330 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 FAM122CQ6P4D5 195 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 ZNF493Q6ZR52 646 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 EXOC3-AS1Q8N2X6 119 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 RNF141Q8WVD5 230 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 LINC00477Q96M19 166 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 PARD6GQ9BYG4 376 aaPredicted RBP5.78□□□□□ -1.48
VPS53-214ENST00000572607 DNAH17Q9UFH2 4485 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 PKHD1P08F94 4074 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 ABCA13Q86UQ4 5058 aa5.78□□□□□ -1.48
VPS53-214ENST00000572607 A0A1W2PPV4 95 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 NDUFB4O95168 129 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 SLC25A5P05141 298 aaKnown RBP5.77□□□□□ -1.49
VPS53-214ENST00000572607 GIPP09681 153 aaPredicted RBP5.77□□□□□ -1.49
VPS53-214ENST00000572607 P0DMU3 169 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 FAM231AP0DMU4 169 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 FAM231CP0DMU5 169 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 CT45A10P0DMU9 189 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 DEFB130BP0DP73 79 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 DEFB130AP0DP74 79 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 FAM74A1Q5RGS3 127 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 UBE2DNLQ8IWF7 75 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 INO80EQ8NBZ0 244 aaPredicted RBP5.77□□□□□ -1.49
VPS53-214ENST00000572607 TMEM263Q8WUH6 116 aaKnown RBP5.77□□□□□ -1.49
VPS53-214ENST00000572607 FXYD5Q96DB9 178 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 FAM167A-AS1Q96KT0 104 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 TIMM8BQ9Y5J9 83 aaPredicted RBP5.77□□□□□ -1.49
VPS53-214ENST00000572607 DNAH2Q9P225 4427 aa5.77□□□□□ -1.49
VPS53-214ENST00000572607 TRAV12-3A0A0B4J271 114 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 SNURFLB1AK76 121 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 GPX1P07203 203 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 AZU1P20160 251 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 M6PRP20645 277 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 RANP62826 216 aaKnown RBP5.76□□□□□ -1.49
VPS53-214ENST00000572607 ERCC8Q13216 396 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 LYPD1Q8N2G4 141 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 HSD17B11Q8NBQ5 300 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 CMTM2Q8TAZ6 248 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 RXFP4Q8TDU9 374 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 PHYHIPLQ96FC7 376 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 AQP10Q96PS8 301 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 PYGO2Q9BRQ0 406 aa5.76□□□□□ -1.49
VPS53-214ENST00000572607 IGKV2-40A0A087WW87 121 aaPredicted RBP5.75□□□□□ -1.49
VPS53-214ENST00000572607 FXYD6-FXYD2A0A087WZ82 144 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 C7orf71A4D174 169 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 CBY3A6NI87 242 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 F5H768 121 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 IGKV2D-40P01614 121 aaPredicted RBP5.75□□□□□ -1.49
VPS53-214ENST00000572607 MBP02144 154 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 PRM2P04554 102 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 ATP5G1P05496 136 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 ATP5G3P48201 142 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 RAB2AP61019 212 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 KIR3DS1Q14943 382 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 PQLC2Q6ZP29 291 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 C9orf47Q6ZRZ4 202 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 ZNF680Q8NEM1 530 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 OR10G4Q8NGN3 311 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 OR10G9Q8NGN4 311 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms