RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 BOLA2-SMG1P6H3BVE0 249 aa15.03■□□□□ -0
VPS53-210ENST00000571456 EIF3GO75821 320 aaKnown RBP eCLIP15.03■□□□□ -0
VPS53-210ENST00000571456 FHITP49789 147 aa15.03■□□□□ -0
VPS53-210ENST00000571456 DEFB1P60022 68 aa15.03■□□□□ -0
VPS53-210ENST00000571456 DEFB135Q30KP9 77 aa15.03■□□□□ -0
VPS53-210ENST00000571456 FBLL1A6NHQ2 334 aaKnown RBP15.02■□□□□ -0
VPS53-210ENST00000571456 K7EQM0 130 aa15.02■□□□□ -0
VPS53-210ENST00000571456 IGKV3-20P01619 116 aa15.02■□□□□ -0
VPS53-210ENST00000571456 TMEM78Q5T7P6 136 aa15.02■□□□□ -0
VPS53-210ENST00000571456 DIRC3C9JPN6 131 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 PRAC2D3DTV9 90 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 NMBP08949 121 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 GIG44P09565 113 aaPredicted RBP15.01□□□□□ -0.01
VPS53-210ENST00000571456 CDKN1BP46527 198 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 FGF8P55075 233 aaPredicted RBP15.01□□□□□ -0.01
VPS53-210ENST00000571456 C20orf144Q9BQM9 153 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 OVOL2Q9BRP0 275 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 LENEPQ9Y5L5 61 aa15.01□□□□□ -0.01
VPS53-210ENST00000571456 LEPP41159 167 aa15□□□□□ -0.01
VPS53-210ENST00000571456 CSNK1G2-AS1Q8NCQ2 148 aa15□□□□□ -0.01
VPS53-210ENST00000571456 IGF2BP2-AS1Q96M15 143 aa15□□□□□ -0.01
VPS53-210ENST00000571456 EDA2RQ9HAV5 297 aa15□□□□□ -0.01
VPS53-210ENST00000571456 INSP01308 110 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 ZNF705DP0CH99 300 aaPredicted RBP14.99□□□□□ -0.01
VPS53-210ENST00000571456 ZNF705BP0CI00 300 aaPredicted RBP14.99□□□□□ -0.01
VPS53-210ENST00000571456 SUMO1P63165 101 aaKnown RBP14.99□□□□□ -0.01
VPS53-210ENST00000571456 BLOC1S1P78537 153 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 PMS2P11Q13670 270 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 SLC35B3Q9H1N7 401 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 XCL2Q9UBD3 114 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 GOLT1BQ9Y3E0 138 aa14.99□□□□□ -0.01
VPS53-210ENST00000571456 FAM74A7A6NL05 159 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 TMEM256Q8N2U0 113 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 HIST1H2BAQ96A08 127 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 RARRES2Q99969 163 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 TXNDC17Q9BRA2 123 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 TMPRSS5Q9H3S3 457 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 MANBALQ9NQG1 85 aa14.98□□□□□ -0.01
VPS53-210ENST00000571456 SMIM9A6NGZ8 99 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 ZNF705EA8MWA4 302 aaPredicted RBP14.97□□□□□ -0.01
VPS53-210ENST00000571456 GGTLC3B5MD39 225 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 F6UZH7 168 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 CRISP2P16562 243 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 TAGLN2P37802 199 aaKnown RBP14.97□□□□□ -0.01
VPS53-210ENST00000571456 ZNF138P52744 262 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 ALKAL2Q6UX46 152 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 NEU1Q99519 415 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 ATG101Q9BSB4 218 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 AGPAT4-IT1Q9H0P7 198 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 ZNF492Q9P255 531 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 EPDR1Q9UM22 224 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 BOLA1Q9Y3E2 137 aa14.97□□□□□ -0.01
VPS53-210ENST00000571456 ALMS1Q8TCU4 4167 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 TCRAP04437 139 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 MIFP14174 115 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 SPINK13Q1W4C9 94 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 ZNF705AQ6ZN79 300 aaPredicted RBP14.96□□□□□ -0.01
VPS53-210ENST00000571456 CYB561D1Q8N8Q1 229 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 OR11H2Q8NH07 326 aa14.96□□□□□ -0.01
VPS53-210ENST00000571456 IGKV2-40A0A087WW87 121 aaPredicted RBP14.95□□□□□ -0.02
VPS53-210ENST00000571456 IFNA1P01562 189 aa14.95□□□□□ -0.02
VPS53-210ENST00000571456 IGKV2D-40P01614 121 aaPredicted RBP14.95□□□□□ -0.02
VPS53-210ENST00000571456 CT45A10P0DMU9 189 aa14.95□□□□□ -0.02
VPS53-210ENST00000571456 FAM19A4Q96LR4 140 aa14.95□□□□□ -0.02
VPS53-210ENST00000571456 YTHDF2Q9Y5A9 579 aaKnown RBP14.95□□□□□ -0.02
VPS53-210ENST00000571456 M0R2Z0 102 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 IFNA7P01567 189 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 UBE2G2P60604 165 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 GOLT1AQ6ZVE7 132 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 VGLL1Q99990 258 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 RETNQ9HD89 108 aa14.94□□□□□ -0.02
VPS53-210ENST00000571456 KLLNB2CW77 178 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 CRXO43186 299 aaPredicted RBP14.93□□□□□ -0.02
VPS53-210ENST00000571456 FXYD7P58549 80 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 CST9LP1Q5W188 147 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 CCDC28AQ8IWP9 274 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 TMEM75Q8N9X5 138 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 NDFIP1Q9BT67 221 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 TMEM208Q9BTX3 173 aa14.93□□□□□ -0.02
VPS53-210ENST00000571456 C11orf68Q9H3H3 251 aaKnown RBP14.93□□□□□ -0.02
VPS53-210ENST00000571456 PAGE4O60829 102 aa14.92□□□□□ -0.02
VPS53-210ENST00000571456 ERCC8Q13216 396 aa14.92□□□□□ -0.02
VPS53-210ENST00000571456 RPH3ALQ9UNE2 315 aa14.92□□□□□ -0.02
VPS53-210ENST00000571456 H7BYZ3 331 aa14.91□□□□□ -0.02
VPS53-210ENST00000571456 TEX261Q6UWH6 196 aa14.91□□□□□ -0.02
VPS53-210ENST00000571456 NIPSNAP3BQ9BS92 247 aa14.91□□□□□ -0.02
VPS53-210ENST00000571456 TMEM189A5PLL7 270 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 PEX7O00628 323 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 S100A9P06702 114 aaKnown RBP14.9□□□□□ -0.02
VPS53-210ENST00000571456 GPX1P07203 203 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 GNG5P63218 68 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 SAPCD1Q5SSQ6 148 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 LYPD6BQ8NI32 183 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 X6R8D5 127 aa14.9□□□□□ -0.02
VPS53-210ENST00000571456 A0A1B0GV50 99 aa14.89□□□□□ -0.03
VPS53-210ENST00000571456 C7orf71A4D174 169 aa14.89□□□□□ -0.03
VPS53-210ENST00000571456 FLI1Q01543 452 aaPredicted RBP14.89□□□□□ -0.03
VPS53-210ENST00000571456 GFI1BQ5VTD9 330 aa14.89□□□□□ -0.03
VPS53-210ENST00000571456 C1orf158Q8N1D5 194 aa14.89□□□□□ -0.03
VPS53-210ENST00000571456 IL17DQ8TAD2 202 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms