RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ACANP16112 2415 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 A0A1W2PS18 150 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 C20orf202A1L168 122 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 C10orf99Q6UWK7 81 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 C18orf32Q8TCD1 76 aa7.68□□□□□ -1.18
VPS53-206ENST00000570359 UBR5O95071 2799 aaPredicted RBP7.68□□□□□ -1.18
VPS53-206ENST00000570359 PAFAH1B2P68402 229 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 UNQ9165/PRO28630Q6UXU0 137 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 RBPMS2Q6ZRY4 209 aaKnown RBP7.67□□□□□ -1.18
VPS53-206ENST00000570359 ZNF843Q8N446 348 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 SH2D1AO60880 128 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 HSBP1O75506 76 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 IGHV4-59P01825 116 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 PPBPP02775 128 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 ESDP10768 282 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 ARL3P36405 182 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 RNASE8Q8TDE3 154 aaKnown RBP7.67□□□□□ -1.18
VPS53-206ENST00000570359 KCNS1Q96KK3 526 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 ZFAND3Q9H8U3 227 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 NRN1Q9NPD7 142 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 CLEC5AQ9NY25 188 aa7.67□□□□□ -1.18
VPS53-206ENST00000570359 ORM1P02763 201 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 EDN2P20800 178 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 ZNF80P51504 273 aaPredicted RBP7.66□□□□□ -1.18
VPS53-206ENST00000570359 SRSF1Q07955 248 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS53-206ENST00000570359 LCN12Q6JVE5 192 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 S100A7AQ86SG5 101 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 SVIPQ8NHG7 77 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 METTL26Q96S19 204 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 CHTOPQ9Y3Y2 248 aaKnown RBP7.66□□□□□ -1.18
VPS53-206ENST00000570359 TMEM213A2RRL7 107 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 Q6ZQT7 251 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 MCRIP2Q9BUT9 160 aaKnown RBP7.66□□□□□ -1.18
VPS53-206ENST00000570359 PRSS22Q9GZN4 317 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 RNF24Q9Y225 148 aa7.66□□□□□ -1.18
VPS53-206ENST00000570359 ZNF469Q96JG9 3925 aaPredicted RBP7.66□□□□□ -1.18
VPS53-206ENST00000570359 CLPSL1A2RUU4 121 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 B4DSR2 109 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 M0R2Z0 102 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 GPX1P07203 203 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 PSG9Q00887 426 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 DEFB112Q30KQ8 113 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 IL17RELQ6ZVW7 336 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 APCP25054 2843 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 WNK1Q9H4A3 2382 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 LOC389332A0A1B0GUA5 103 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 TMEM189A5PLL7 270 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 SPRY2O43597 315 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 BUB3O43684 328 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 ZNF324O75467 553 aaPredicted RBP7.65□□□□□ -1.18
VPS53-206ENST00000570359 FXYD7P58549 80 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 Q0VG73 95 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 GLMPQ8WWB7 406 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 WFDC12Q8WWY7 111 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 ALKBH7Q9BT30 221 aaPredicted RBP7.65□□□□□ -1.18
VPS53-206ENST00000570359 ZNF492Q9P255 531 aa7.65□□□□□ -1.18
VPS53-206ENST00000570359 MTORP42345 2549 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 LYZL1Q6UWQ5 148 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 WFDC3Q8IUB2 231 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 OR4B1Q8NGF8 309 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 VAMP8Q9BV40 100 aa7.65□□□□□ -1.19
VPS53-206ENST00000570359 TENM4Q6N022 2769 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 A0A1B0GXF2 115 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 NDUFS8O00217 210 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 SMAD7O15105 426 aaKnown RBP7.64□□□□□ -1.19
VPS53-206ENST00000570359 IGHG4P01861 327 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 RPS20P60866 119 aaKnown RBP7.64□□□□□ -1.19
VPS53-206ENST00000570359 UBE2V1Q13404 147 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 OR10J3Q5JRS4 329 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 SMIM15Q7Z3B0 74 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 BORCS7Q96B45 105 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 C16orf92Q96LL3 132 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 ZNF48Q96MX3 618 aaPredicted RBP7.64□□□□□ -1.19
VPS53-206ENST00000570359 FLNAP21333 2647 aaKnown RBP7.64□□□□□ -1.19
VPS53-206ENST00000570359 A0A1B0GUT8 65 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 PRSS47A8MTI9 375 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 SMKR1H3BMG3 65 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 TFPI2P48307 235 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 PTTG1IPP53801 180 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 MAJINQ3KP22 176 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 NIT1Q86X76 327 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 LYPD1Q8N2G4 141 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 PRR25Q96S07 402 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 NOTCH2Q04721 2471 aa7.64□□□□□ -1.19
VPS53-206ENST00000570359 ITPR3Q14573 2671 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 TRBV7-1A0A0A6YYK4 115 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 CCL25O15444 150 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 PDE6HQ13956 83 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 COX19Q49B96 90 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 FAM162BQ5T6X4 162 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 C8orf86Q6ZUL3 223 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 OR4X2Q8NGF9 303 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 TXN2Q99757 166 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 NF1P21359 2839 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 NCR2O95944 276 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 C3orf79P0CE67 100 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 BATFQ16520 125 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 TM4SF20Q53R12 229 aa7.63□□□□□ -1.19
VPS53-206ENST00000570359 LINC00173Q6ZV60 143 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms