RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TNFAIP6P98066 277 aaPredicted RBP8.59□□□□□ -1.03
CLK3-226ENST00000569406 RTL8AQ9BWD3 113 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 ZNF256Q9Y2P7 627 aaPredicted RBP8.59□□□□□ -1.03
CLK3-226ENST00000569406 DCHS2Q6V1P9 2916 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A10PA6NDY2 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A20PA6NIJ5 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A7PA6NKC0 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A22PA8MWA6 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A12PA8MX19 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A5PA8MXJ8 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A23PA8MXZ1 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A15PP0C7V4 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A13PP0C7W8 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A14PP0C7W9 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM90A24PP0C7X0 464 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 FAM231DQ6ZW35 169 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 DEFB108BQ8NET1 73 aa8.59□□□□□ -1.03
CLK3-226ENST00000569406 UQCRQO14949 82 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 TIMM8AO60220 97 aaPredicted RBP8.58□□□□□ -1.04
CLK3-226ENST00000569406 HBDP02042 147 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 RPS28P62857 69 aaKnown RBP8.58□□□□□ -1.04
CLK3-226ENST00000569406 CEMP1Q6PRD7 247 aaPredicted RBP8.58□□□□□ -1.04
CLK3-226ENST00000569406 Q8N1Y9 231 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 ZNRF2Q8NHG8 242 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 DSCR8Q96T75 97 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 RPP21Q9H633 154 aaKnown RBP8.58□□□□□ -1.04
CLK3-226ENST00000569406 JPT2Q9H910 190 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 PRO0628Q9UI54 55 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 KLF13Q9Y2Y9 288 aaPredicted RBP8.58□□□□□ -1.04
CLK3-226ENST00000569406 DSCAML1Q8TD84 2053 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 LYZL6O75951 148 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 Q6P435 159 aa8.58□□□□□ -1.04
CLK3-226ENST00000569406 ZZEF1O43149 2961 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 IGKCP01834 107 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 MALP21145 153 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 TAL2Q16559 108 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 ZNF672Q499Z4 452 aaPredicted RBP8.57□□□□□ -1.04
CLK3-226ENST00000569406 MDP1Q86V88 176 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 OR11H6Q8NGC7 330 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 IGFBPL1Q8WX77 278 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 TEX49A0A1B0GTD5 131 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 WNT9BO14905 357 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 CD3EP07766 207 aa8.57□□□□□ -1.04
CLK3-226ENST00000569406 UBE2L3P68036 154 aaKnown RBP8.57□□□□□ -1.04
CLK3-226ENST00000569406 TRBV6-6A0A0A6YYG2 114 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 NPYP01303 97 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 HLA-DRB4P13762 266 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 LINC00527Q9UJ94 153 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 HLA-DRB4X5D2U9 266 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 hADV29S1A0JD25 119 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 DLX6P56179 175 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 DCTN5Q9BTE1 182 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 FAM236DA0A1B0GTK5 79 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 C17orf98A8MV24 154 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 M0R2P5 195 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 SPINT2O43291 252 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 FAM236CP0DP71 79 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 IGHV1-2P23083 117 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 HERVK_113P61574 105 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 LEAP2Q969E1 77 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 FOXC2Q99958 501 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 HHLA3Q9XRX5 114 aa8.56□□□□□ -1.04
CLK3-226ENST00000569406 NPIPB11E5RHQ5 1161 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 HAX1O00165 279 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 RNF152Q8N8N0 203 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 LINC00526Q96FQ7 95 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 TRGV9Q99603 122 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 TMEM30CPA0ZSE6 113 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 IGFL2Q6UWQ7 119 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 LINC00336Q6ZUF6 198 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 SIRPDQ9H106 197 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 A0A0U1RQV1 116 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 PEX7O00628 323 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 PDPNQ86YL7 162 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 AMN1Q8IY45 258 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 EXOC3-AS1Q8N2X6 119 aa8.55□□□□□ -1.04
CLK3-226ENST00000569406 ANKRD11Q6UB99 2663 aaPredicted RBP8.54□□□□□ -1.04
CLK3-226ENST00000569406 TRAV40A0A0B4J280 105 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 NCBP2LA6PVI3 153 aaKnown RBP8.54□□□□□ -1.04
CLK3-226ENST00000569406 J3QT63 122 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 TIMM23O14925 209 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 IGHG3P01860 377 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 CRIP2P52943 208 aaPredicted RBP8.54□□□□□ -1.04
CLK3-226ENST00000569406 LINC00322Q6ZN03 302 aaPredicted RBP8.54□□□□□ -1.04
CLK3-226ENST00000569406 C11orf53Q8IXP5 236 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 D6R8Y8 96 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 IGHV3-48P01763 117 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 TRACP01848 142 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 MYCNOSP40205 109 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 EFNA4P52798 201 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 IL17RELQ6ZVW7 336 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 FDCSPQ8NFU4 85 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 NPIPB3Q92617 1050 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 DPH3Q96FX2 82 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 IFI27L2Q9H2X8 130 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 NXT2Q9NPJ8 142 aaKnown RBP8.54□□□□□ -1.04
CLK3-226ENST00000569406 CSMD1Q96PZ7 3565 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 PLXNB1O43157 2135 aa8.54□□□□□ -1.04
CLK3-226ENST00000569406 H7C2G1 150 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 Q5XG85 94 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms