RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 DLX6P56179 175 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 C2orf91Q6ZV80 131 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 SFTA2Q6UW10 78 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 COL25A1Q9BXS0 654 aaPredicted RBP11.38□□□□□ -0.59
VPS35-210ENST00000568784 RAB1BQ9H0U4 201 aa11.38□□□□□ -0.59
VPS35-210ENST00000568784 LRBAP50851 2863 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 NPIPB6E9PJ23 425 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 SPANXN1Q5VSR9 72 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 PIP4P1Q86T03 277 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 SHISA9B4DS77 424 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 GAS8-AS1O95177 125 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 C3orf36Q3SXR2 165 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 LCNL1Q6ZST4 164 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 PRR25Q96S07 402 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 TRAV26-2A0A0B4J265 109 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 A0A1B0GW15 77 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 HSD52Q0P140 79 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 LINC00527Q9UJ94 153 aa11.37□□□□□ -0.59
VPS35-210ENST00000568784 NDUFS7O75251 213 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 FOXC1Q12948 553 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 NDUFA3O95167 84 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 ZNF80P51504 273 aaPredicted RBP11.36□□□□□ -0.59
VPS35-210ENST00000568784 SMIM13P0DJ93 91 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 C5orf64Q2M2E5 130 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 ZC2HC1BQ5TFG8 222 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 TMEM158Q8WZ71 300 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 TNFRSF14Q92956 283 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 JKAMPQ9P055 326 aa11.36□□□□□ -0.59
VPS35-210ENST00000568784 S100A4P26447 101 aaKnown RBP11.35□□□□□ -0.59
VPS35-210ENST00000568784 ARL3P36405 182 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 IGFL3Q6UXB1 125 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 JMJD8Q96S16 334 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 CHD8Q9HCK8 2581 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 C9orf118A6NHY6 69 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 CEACAM4O75871 244 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 KAAG1Q9UBP8 84 aa11.35□□□□□ -0.59
VPS35-210ENST00000568784 IGHV3OR16-10A0A075B7F0 116 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 FABP5P3A8MUU1 101 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 SAMD5Q5TGI4 173 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 CLEC19AQ6UXS0 136 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 MYOZ3Q8TDC0 251 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 CLEC3BP05452 202 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 NDPQ00604 133 aa11.34□□□□□ -0.59
VPS35-210ENST00000568784 IL17RELQ6ZVW7 336 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 PRAC2D3DTV9 90 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 M0R381 172 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 GOSR1O95249 250 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 TNFRSF6BO95407 300 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 LGALS9BQ3B8N2 356 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 LGALS9CQ6DKI2 356 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 LYPD1Q8N2G4 141 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 ZZEF1O43149 2961 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 TRAV40A0A0B4J280 105 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 CRYGBP07316 175 aa11.33□□□□□ -0.6
VPS35-210ENST00000568784 COL27A1Q8IZC6 1860 aaPredicted RBP11.33□□□□□ -0.6
VPS35-210ENST00000568784 A0A096LNJ9 63 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 CCL21O00585 134 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 MGPP08493 103 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 C15orf32Q32M92 178 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 TMEM78Q5T7P6 136 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 DYNAPQ8N1N2 210 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 OR4X2Q8NGF9 303 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 OR9G4Q8NGQ1 327 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 HIST1H4GQ99525 98 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 OR1N2Q8NGR9 330 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 CSMD1Q96PZ7 3565 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 H3BRM9 83 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 FXYD2P54710 66 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 C8orf31Q8N9H6 132 aa11.32□□□□□ -0.6
VPS35-210ENST00000568784 IGKCP01834 107 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 RPS20P60866 119 aaKnown RBP11.31□□□□□ -0.6
VPS35-210ENST00000568784 ARL6IP6Q8N6S5 226 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 SPENQ96T58 3664 aaKnown RBP11.31□□□□□ -0.6
VPS35-210ENST00000568784 IGKV2D-26A0A0A0MRZ7 120 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 TMEM8BA6NDV4 472 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 EFNA4P52798 201 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 FANCD2OSQ96PS1 177 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 CHAC1Q9BUX1 264 aa11.31□□□□□ -0.6
VPS35-210ENST00000568784 ZNF292O60281 2723 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 H3BVH4 76 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 BOD1L2Q8IYS8 172 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 SPTBN4Q9H254 2564 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 K7EP34 96 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 GLMPQ8WWB7 406 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 AGRNO00468 2067 aa11.3□□□□□ -0.6
VPS35-210ENST00000568784 G3V318 75 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 SMIM17P0DL12 118 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 AMTNQ6UX39 209 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 GTSF1LQ9H1H1 148 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 A0A1W2PPM0 123 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 C16orf92Q96LL3 132 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 DPM2O94777 84 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 TRGV3P03979 118 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 PDE6HQ13956 83 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 VMO1Q7Z5L0 202 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 DTX2Q86UW9 622 aa11.29□□□□□ -0.6
VPS35-210ENST00000568784 MRPL35Q9NZE8 188 aaKnown RBP11.29□□□□□ -0.6
VPS35-210ENST00000568784 SMAGPQ0VAQ4 97 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 SCGB1D4Q6XE38 83 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 RELNP78509 3460 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms