RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TMEM244Q5VVB8 128 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 FAAP20Q6NZ36 180 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 SLC25A34Q6PIV7 304 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 PDZD9Q8IXQ8 264 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 TCTE3Q8IZS6 198 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 OR8I2Q8N0Y5 310 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 ZFP62Q8NB50 900 aaPredicted RBP1.99□□□□□ -2.09
VPS35-209ENST00000568642 TOMM6Q96B49 74 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 CMBLQ96DG6 245 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 LYZL4Q96KX0 146 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 TMEM204Q9BSN7 226 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 UPK3BQ9BT76 320 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 SHANK2-AS3Q9BTD1 123 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 DEFB126Q9BYW3 111 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 NKX6-2Q9C056 277 aaPredicted RBP1.99□□□□□ -2.09
VPS35-209ENST00000568642 YIPF3Q9GZM5 350 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 CBLN4Q9NTU7 201 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 FAM49BQ9NUQ9 324 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 SCN3BQ9NY72 215 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 SPANXCQ9NY87 97 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 AK3Q9UIJ7 227 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 GNG8Q9UK08 70 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 ZFP30Q9Y2G7 519 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 LINC00588Q9Y4M8 146 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 HMCN2Q8NDA2 5059 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 KIAA1549Q9HCM3 1950 aa1.99□□□□□ -2.09
VPS35-209ENST00000568642 PKHD1P08F94 4074 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IGLV7-46A0A075B6I9 117 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IGLV3-10A0A075B6K4 115 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IGLV3-9A0A075B6K5 115 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 TRAV5A0A0B4J249 113 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IGHV5-51A0A0C4DH38 117 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 ODAMA1E959 279 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 TMEM212A6NML5 194 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 ZNF727A8MUV8 499 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 BPY2O14599 106 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 NPFFO15130 113 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 FAM107AO95990 144 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IGKV1-16P04430 117 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 SCGB1C2P0DMR2 95 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 CCL3P10147 92 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 CMPK1P30085 196 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 NMUP48645 174 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 RAB5CP51148 216 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 AQP4P55087 323 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 NDUFA6P56556 154 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 GABARAPL2P60520 117 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 KISS1Q15726 138 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 RRN3P1Q2M238 152 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 C9orf129Q5T035 196 aaKnown RBP1.98□□□□□ -2.09
VPS35-209ENST00000568642 NCMAPQ5T1S8 102 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 C1orf140Q5VVS0 124 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 TEX261Q6UWH6 196 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 SPATA12Q7Z6I5 190 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 PDPNQ86YL7 162 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 SAXO1Q8IYX7 474 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 ORMDL3Q8N138 153 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 RPRMLQ8N4K4 120 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 ZFAND2AQ8N6M9 145 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 Q8N976 141 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 OR5H2Q8NGV7 314 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 LINC01560Q8TB33 94 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 WFDC5Q8TCV5 224 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 SCGB1C1Q8TD33 95 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 SNHG12Q9BXW3 62 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 IMUPQ9GZP8 106 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 EFCAB1Q9HAE3 211 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 FAM60AQ9NP50 221 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 CELA1Q9UNI1 258 aa1.98□□□□□ -2.09
VPS35-209ENST00000568642 A0A096LNT2 108 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 IGKV3D-20A0A0C4DH25 116 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 A8MWP4 228 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 ZNF670-ZNF695F2Z2N8 137 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 INS-IGF2F8WCM5 200 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 K7EIL1 84 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 TAX1BP3O14907 124 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 PITX3O75364 302 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 SRP19P09132 144 aaKnown RBP1.97□□□□□ -2.09
VPS35-209ENST00000568642 CD7P09564 240 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 UCHL1P09936 223 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 CRHBPP24387 322 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 ZNF83P51522 516 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 FOXA1P55317 472 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 LYZP61626 148 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 HBA1P69905 142 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 CCL20P78556 96 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 GNA12Q03113 381 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 CAV1Q03135 178 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 RTL8BQ17RB0 113 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 Q1RN00 199 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 VMA21Q3ZAQ7 101 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 SCGB2B2Q4G0G5 96 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 LINC01554Q52M75 96 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 TMEM69Q5SWH9 247 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 LDLRAD2Q5SZI1 272 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 FAM104BQ5XKR9 115 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 GLT8D1Q68CQ7 371 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 PHF5AQ7RTV0 110 aaKnown RBP1.97□□□□□ -2.09
VPS35-209ENST00000568642 TRAPPC6BQ86SZ2 158 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 ZNF329Q86UD4 541 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms