RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ORM1P02763 201 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 CSN3P07498 182 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 RNF224P0DH78 156 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 IGHV4-38-2P0DP08 117 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 MED14OSP0DP75 135 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 IGLL1P15814 213 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 CKS2P33552 79 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 CFHR3Q02985 330 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 GAGE1Q13065 139 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 ERCC8Q13216 396 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 TWIST1Q15672 202 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 LGALS9BQ3B8N2 356 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 LGALS9CQ6DKI2 356 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 BRD3OSQ6XYD6 125 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 IL17RELQ6ZVW7 336 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 SMIM15Q7Z3B0 74 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 AMN1Q8IY45 258 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 DEFB125Q8N687 156 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 RNF185Q96GF1 192 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 C16orf92Q96LL3 132 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 MAP1LC3AQ9H492 121 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 NXT2Q9NPJ8 142 aaKnown RBP4.79□□□□□ -1.64
CLN3-223ENST00000566472 SIGLEC8Q9NYZ4 499 aa4.79□□□□□ -1.64
CLN3-223ENST00000566472 SPENQ96T58 3664 aaKnown RBP4.79□□□□□ -1.64
CLN3-223ENST00000566472 TLN1Q9Y490 2541 aaKnown RBP4.78□□□□□ -1.64
CLN3-223ENST00000566472 IGHV3OR16-10A0A075B7F0 116 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 IGHV3OR16-8A0A075B7F1 116 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 IGKV3D-20A0A0C4DH25 116 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 PRSS47A8MTI9 375 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 K7EMT4 169 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 SOCS3O14543 225 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 TCF21O43680 179 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 IGLV1-40P01703 118 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 IFI27P40305 119 aaPredicted RBP4.78□□□□□ -1.64
CLN3-223ENST00000566472 IGFL4Q6B9Z1 124 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 LINC00173Q6ZV60 143 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 ZNF575Q86XF7 245 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 APRG1Q8IVJ8 170 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 ATOH7Q8N100 152 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 RNF182Q8N6D2 247 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 LINC01356Q8N9X3 169 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 ZNF738Q8NE65 137 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 PCNX1Q96RV3 2341 aa4.78□□□□□ -1.64
CLN3-223ENST00000566472 MAP1BP46821 2468 aaKnown RBP4.78□□□□□ -1.64
CLN3-223ENST00000566472 A0A096LNJ9 63 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 TRAV21A0A0B4J279 112 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 IGHV3-66A0A0C4DH42 116 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 IGHV7-4-1A0A0J9YVY3 117 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 PLXNB1O43157 2135 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 NPYP01303 97 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 FOXE3Q13461 319 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 LY6EQ16553 131 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 PRR31Q5SQ13 230 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 SLC25A34Q6PIV7 304 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 GPHB5Q86YW7 130 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 OR1N2Q8NGR9 330 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 OR10J6PQ8NGY7 276 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 MRAP2Q96G30 205 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 FAM19A4Q96LR4 140 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 SCRT2Q9NQ03 307 aa4.77□□□□□ -1.65
CLN3-223ENST00000566472 ZFHX4Q86UP3 3567 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 BSNQ9UPA5 3926 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 A0A096LNT2 108 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 SMAD7O15105 426 aaKnown RBP4.76□□□□□ -1.65
CLN3-223ENST00000566472 DLEU1O43261 78 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 ZNF207O43670 478 aaKnown RBP4.76□□□□□ -1.65
CLN3-223ENST00000566472 TNFRSF6BO95407 300 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 COX8AP10176 69 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 PF4V1P10720 104 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 FCER1GP30273 86 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 BATFQ16520 125 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 MAJINQ3KP22 176 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 UNQ9165/PRO28630Q6UXU0 137 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 ZFAND2AQ8N6M9 145 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 Q8N8P6 123 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 OR4X2Q8NGF9 303 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 ODF3Q96PU9 254 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 DAZ1Q9NQZ3 744 aaKnown RBP4.76□□□□□ -1.65
CLN3-223ENST00000566472 C11orf21Q9P2W6 132 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 UFC1Q9Y3C8 167 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 GOLT1BQ9Y3E0 138 aa4.76□□□□□ -1.65
CLN3-223ENST00000566472 FRYQ5TBA9 3013 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 IGLV2-18A0A075B6J9 118 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 IGHV3OR16-13A0A075B7E8 117 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 IGHV3-49A0A0A0MS15 119 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 IGHV3-74A0A0B4J1X5 117 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 LOC389332A0A1B0GUA5 103 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 hDV102S1A0JD36 115 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 SMKR1H3BMG3 65 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 K7EMI3 77 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 M0R381 172 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 ATP5LO75964 103 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 NCR2O95944 276 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 FSHBP01225 129 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 TRBV12-3P01733 135 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 PRB4P10163 310 aaPredicted RBP4.75□□□□□ -1.65
CLN3-223ENST00000566472 COX6B1P14854 86 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 ZNF25P17030 456 aaPredicted RBP4.75□□□□□ -1.65
CLN3-223ENST00000566472 ID1P41134 155 aa4.75□□□□□ -1.65
CLN3-223ENST00000566472 ASIPP42127 132 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms