RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SPANXA1Q9NS26 97 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 PSG8Q9UQ74 426 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 H3BRN7 92 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 DLX1P56177 255 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 SIGLEC15Q6ZMC9 328 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 GTF2H5Q6ZYL4 71 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 TP73-AS1Q9UF72 201 aa10.4□□□□□ -0.74
VPS4A-204ENST00000566354 IGHV4-39P01824 125 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 CSN1S1P47710 185 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 Q71RC1 249 aaPredicted RBP10.39□□□□□ -0.75
VPS4A-204ENST00000566354 DEFB125Q8N687 156 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 OR1N2Q8NGR9 330 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 C17orf77Q96MU5 243 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 K7EIM0 57 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 TAX1BP3O14907 124 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 CNIH1O95406 144 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 HERV-K104P63124 156 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 ZNF491Q8N8L2 437 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 PRSS3P2Q8NHM4 247 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 TIMD4Q96H15 378 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 ZNF747Q9BV97 191 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 APCP25054 2843 aa10.39□□□□□ -0.75
VPS4A-204ENST00000566354 HIST1H1AQ02539 215 aaPredicted RBP10.38□□□□□ -0.75
VPS4A-204ENST00000566354 PRB3Q04118 309 aaPredicted RBP10.38□□□□□ -0.75
VPS4A-204ENST00000566354 FA2HQ7L5A8 372 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 OR10AG1Q8NH19 301 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 RNF125Q96EQ8 232 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 LY6LH3BQJ8 138 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 COX7A1P24310 79 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 CRIP1P50238 77 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 ZNF493Q6ZR52 646 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 ZNF414Q96IQ9 312 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 PMCHL2Q9BQD1 86 aa10.38□□□□□ -0.75
VPS4A-204ENST00000566354 MCRIP2Q9BUT9 160 aaKnown RBP10.38□□□□□ -0.75
VPS4A-204ENST00000566354 ABCA1O95477 2261 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 WIPF1O43516 503 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 CT45A10P0DMU9 189 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 KRTAP10-9P60411 292 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 HIST2H2BCQ6DN03 193 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 GEMIN7Q9H840 131 aaKnown RBP10.37□□□□□ -0.75
VPS4A-204ENST00000566354 WNK2Q9Y3S1 2297 aa10.37□□□□□ -0.75
VPS4A-204ENST00000566354 MUC21A0A0G2JKD1 596 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 MUC21A0A140T8X8 626 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 MRPS12O15235 138 aaKnown RBP10.36□□□□□ -0.75
VPS4A-204ENST00000566354 CD5LO43866 347 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 IL4P05112 153 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 PDE6HQ13956 83 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 MUC21Q5SSG8 566 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 TIMM8BQ9Y5J9 83 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-204ENST00000566354 NAV2Q8IVL1 2488 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 WI2-2373I1.2A0A1W2PRP0 233 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 COX8AP10176 69 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 FCGR2BP31994 310 aaPredicted RBP10.36□□□□□ -0.75
VPS4A-204ENST00000566354 ZNF562Q6V9R5 426 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 PSMG3-AS1Q96PY0 264 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 YAE1D1Q9NRH1 226 aa10.36□□□□□ -0.75
VPS4A-204ENST00000566354 TMEM189A5PLL7 270 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 GPR183P32249 361 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 UFSP1Q6NVU6 142 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 BPESC1Q9GZL8 116 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 AAMDCQ9H7C9 122 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 TIMM23O14925 209 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 SAP30O75446 220 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 CD300EQ496F6 205 aaPredicted RBP10.35□□□□□ -0.75
VPS4A-204ENST00000566354 SPATA25Q9BR10 227 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 TPPP3Q9BW30 176 aa10.35□□□□□ -0.75
VPS4A-204ENST00000566354 J3QR89 54 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 M0R3E3 92 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 BRI3O95415 125 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 ATP5J2P56134 94 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 ASCL2Q99929 193 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 U3KQK5 164 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 CSMD1Q96PZ7 3565 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 A0A087X0K7 114 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 NBR2O15453 112 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 IFI27P40305 119 aaPredicted RBP10.34□□□□□ -0.75
VPS4A-204ENST00000566354 OR5A1Q8NGJ0 315 aa10.34□□□□□ -0.75
VPS4A-204ENST00000566354 SVEP1Q4LDE5 3571 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 OR2T8A6NH00 312 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 HSD52Q0P140 79 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 FAM104BQ5XKR9 115 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 AMMECR1LQ6DCA0 310 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 LYZL1Q6UWQ5 148 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 C8orf49Q96NF6 230 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 D6R8Y8 96 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 PSG9Q00887 426 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 NPBQ8NG41 125 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 SIGLEC8Q9NYZ4 499 aa10.33□□□□□ -0.76
VPS4A-204ENST00000566354 ABCA2Q9BZC7 2435 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 HECTD1Q9ULT8 2610 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 NCR2O95944 276 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 IGHG4P01861 327 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 MFAP4P55083 255 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 C2orf91Q6ZV80 131 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 COX8CQ7Z4L0 72 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 ORMDL3Q8N138 153 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 PRELID3AQ96N28 172 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 MRPL16Q9NX20 251 aaKnown RBP10.32□□□□□ -0.76
VPS4A-204ENST00000566354 DPM3Q9P2X0 92 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 ONECUT1Q9UBC0 465 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms