RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 MZT2BQ6NZ67 158 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 Q6ZTI0 123 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 C18orf15Q96N68 181 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 NPCDR1Q9BY65 106 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 Q9H3A6 140 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 TMPRSS5Q9H3S3 457 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 AAMDCQ9H7C9 122 aa12.99□□□□□ -0.33
CLN3-218ENST00000565688 TRGV2A0A075B6R0 118 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 A0A1W2PPQ1 181 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 CDK2AP2O75956 126 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 ERCC8Q13216 396 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 ANXA2RQ3ZCQ2 193 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 FAM19A4Q96LR4 140 aa12.98□□□□□ -0.33
CLN3-218ENST00000565688 MRPS16Q9Y3D3 137 aaKnown RBP12.98□□□□□ -0.33
CLN3-218ENST00000565688 ZNF324O75467 553 aaPredicted RBP12.97□□□□□ -0.33
CLN3-218ENST00000565688 NMBP08949 121 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 PYYP10082 97 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 BTF3P20290 206 aaKnown RBP12.97□□□□□ -0.33
CLN3-218ENST00000565688 ESRGQ1W209 222 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 C9orf47Q6ZRZ4 202 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 LINC00299Q6ZSB3 139 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 EIF4E3Q8N5X7 224 aaKnown RBP12.97□□□□□ -0.33
CLN3-218ENST00000565688 C11orf72Q8NBR9 251 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 BLNKQ8WV28 456 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 AGPAT4-IT1Q9H0P7 198 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 GSN-AS1Q9NRJ2 163 aa12.97□□□□□ -0.33
CLN3-218ENST00000565688 GPX1P07203 203 aa12.96□□□□□ -0.33
CLN3-218ENST00000565688 CRISP2P16562 243 aa12.96□□□□□ -0.33
CLN3-218ENST00000565688 RNASE4P34096 147 aaKnown RBP12.96□□□□□ -0.33
CLN3-218ENST00000565688 CD300CQ08708 224 aa12.96□□□□□ -0.33
CLN3-218ENST00000565688 EXOC3-AS1Q8N2X6 119 aa12.96□□□□□ -0.33
CLN3-218ENST00000565688 SLC25A31Q9H0C2 315 aa12.96□□□□□ -0.33
CLN3-218ENST00000565688 BTN1A1Q13410 526 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 GCSAMLQ5JQS6 135 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 TMEM78Q5T7P6 136 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 SLC25A2Q9BXI2 301 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 KCNIP2Q9NS61 270 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 FUT9Q9Y231 359 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 ABCA13Q86UQ4 5058 aa12.95□□□□□ -0.34
CLN3-218ENST00000565688 TRGV1A0A0A0MS02 117 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 E5RGE8 158 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 TCL1AP56279 114 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 NHLH2Q02577 135 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 ASAH1Q13510 395 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 ICAM4Q14773 271 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 IBA57Q5T440 356 aaKnown RBP12.94□□□□□ -0.34
CLN3-218ENST00000565688 OR5C1Q8NGR4 320 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 THAP6Q8TBB0 222 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 KRTAP1-5Q9BYS1 174 aa12.94□□□□□ -0.34
CLN3-218ENST00000565688 NBEAP1P0C6P0 100 aa12.93□□□□□ -0.34
CLN3-218ENST00000565688 S100ZQ8WXG8 99 aa12.93□□□□□ -0.34
CLN3-218ENST00000565688 VSIG2Q96IQ7 327 aa12.93□□□□□ -0.34
CLN3-218ENST00000565688 FAM167A-AS1Q96KT0 104 aa12.93□□□□□ -0.34
CLN3-218ENST00000565688 HSPG2P98160 4391 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 IGKV2-40A0A087WW87 121 aaPredicted RBP12.92□□□□□ -0.34
CLN3-218ENST00000565688 A0A096LPF7 62 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 RGS13O14921 159 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 SPINK4O60575 86 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 IGKV2D-40P01614 121 aaPredicted RBP12.92□□□□□ -0.34
CLN3-218ENST00000565688 FAM122CQ6P4D5 195 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 MIR17HGQ75NE6 70 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 ZFAND2AQ8N6M9 145 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 VGLL1Q99990 258 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 MRPL32Q9BYC8 188 aaKnown RBP12.92□□□□□ -0.34
CLN3-218ENST00000565688 NMES1Q9C002 83 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 OR51M1Q9H341 326 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 KLF12Q9Y4X4 402 aa12.92□□□□□ -0.34
CLN3-218ENST00000565688 TRBV7-9A0A0J9YWB2 115 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 SPATA12Q7Z6I5 190 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 ENKURQ8TC29 256 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 ST6GAL2Q96JF0 529 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 PAXXQ9BUH6 204 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 ZNF492Q9P255 531 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 LRP1BQ9NZR2 4599 aa12.91□□□□□ -0.34
CLN3-218ENST00000565688 IGHV1OR15-1A0A075B7D0 117 aa12.9□□□□□ -0.34
CLN3-218ENST00000565688 ZNF138P52744 262 aa12.9□□□□□ -0.34
CLN3-218ENST00000565688 CYCSP99999 105 aaKnown RBP12.9□□□□□ -0.34
CLN3-218ENST00000565688 ARPC5LQ9BPX5 153 aa12.9□□□□□ -0.34
CLN3-218ENST00000565688 KRTAP4-5Q9BYR2 181 aa12.9□□□□□ -0.34
CLN3-218ENST00000565688 WDR61Q9GZS3 305 aaKnown RBP12.9□□□□□ -0.34
CLN3-218ENST00000565688 C17orf112F2Z3M2 114 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 PAX4O43316 350 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 SIX6O95475 246 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 CSN1S1P47710 185 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 SLAQ13239 276 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 LRRC37A5PQ49AS3 106 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 PRR9Q5T870 116 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 FXYD5Q96DB9 178 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 OR5AC2Q9NZP5 309 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 ICOSQ9Y6W8 199 aa12.89□□□□□ -0.35
CLN3-218ENST00000565688 SIVA1O15304 175 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 PRAF2O60831 178 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 OR10J4P0C629 311 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 LYPD1Q8N2G4 141 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 MAPKAPK5-AS1Q8N8E1 139 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 PRO0255Q9UI72 69 aa12.88□□□□□ -0.35
CLN3-218ENST00000565688 RBAKDNA6NC62 111 aa12.87□□□□□ -0.35
CLN3-218ENST00000565688 OR7C2O60412 319 aa12.87□□□□□ -0.35
CLN3-218ENST00000565688 ZNF415Q09FC8 603 aa12.87□□□□□ -0.35
CLN3-218ENST00000565688 PHYHIPLQ96FC7 376 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms