RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 LINC01560Q8TB33 94 aa12.81□□□□□ -0.36
LINC00554-201ENST00000564841 GRNP28799 593 aaKnown RBP12.8□□□□□ -0.36
LINC00554-201ENST00000564841 GAFA1Q96PS6 74 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 SRSF8Q9BRL6 282 aaKnown RBP12.8□□□□□ -0.36
LINC00554-201ENST00000564841 TMEM160Q9NX00 188 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 PSG8Q9UQ74 426 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 ODF1Q14990 250 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 C12orf74Q32Q52 190 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 CCL17Q92583 94 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 PTH2Q96A98 100 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 RNF7Q9UBF6 113 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 NPIPB5A8MRT5 1133 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 ENSAO43768 121 aaKnown RBP12.8□□□□□ -0.36
LINC00554-201ENST00000564841 LEPP41159 167 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 FOXC2Q99958 501 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 PRO0461Q9UI25 63 aa12.8□□□□□ -0.36
LINC00554-201ENST00000564841 THBDP07204 575 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 SPINK8P0C7L1 97 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 RNF183Q96D59 192 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 ZNF48Q96MX3 618 aaPredicted RBP12.79□□□□□ -0.36
LINC00554-201ENST00000564841 TRAV40A0A0B4J280 105 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 LY6DQ14210 128 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 TMEM133Q9H2Q1 129 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 CDIP1Q9H305 208 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 OTORQ9NRC9 128 aa12.79□□□□□ -0.36
LINC00554-201ENST00000564841 MALRD1Q5VYJ5 2156 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 CNTFRP26992 372 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 ATP5IP56385 69 aaPredicted RBP12.78□□□□□ -0.36
LINC00554-201ENST00000564841 C8orf46Q8TAG6 207 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 CENPEQ02224 2701 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 RAI1Q7Z5J4 1906 aaPredicted RBP12.78□□□□□ -0.36
LINC00554-201ENST00000564841 TWIST1Q15672 202 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 TCTEX1D4Q5JR98 221 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 C8orf86Q6ZUL3 223 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 NFE4Q86UQ8 179 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 OSR1Q8TAX0 266 aaPredicted RBP12.78□□□□□ -0.36
LINC00554-201ENST00000564841 SLC25A39Q9BZJ4 359 aaPredicted RBP12.78□□□□□ -0.36
LINC00554-201ENST00000564841 HIGD1AQ9Y241 93 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 S4R3C0 116 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 TMEM8BA6NDV4 472 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 APOMO95445 188 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 SUB1P53999 127 aaKnown RBP eCLIP12.78□□□□□ -0.36
LINC00554-201ENST00000564841 LYPD2Q6UXB3 125 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 TMEM75Q8N9X5 138 aa12.78□□□□□ -0.36
LINC00554-201ENST00000564841 LHBP01229 141 aa12.77□□□□□ -0.36
LINC00554-201ENST00000564841 TM2D2Q9BX73 214 aa12.77□□□□□ -0.36
LINC00554-201ENST00000564841 FCN3O75636 299 aa12.77□□□□□ -0.37
LINC00554-201ENST00000564841 ARHGAP32A7KAX9 2087 aa12.77□□□□□ -0.37
LINC00554-201ENST00000564841 CCL21O00585 134 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 IGLV2-23P01705 113 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 RBP4P02753 201 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 XGP55808 180 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 MZT1Q08AG7 82 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 ADIPOQQ15848 244 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 ZNF493Q6ZR52 646 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 TMEM167AQ8TBQ9 72 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 MRPL16Q9NX20 251 aaKnown RBP12.76□□□□□ -0.37
LINC00554-201ENST00000564841 U3KQK5 164 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 IGKCP01834 107 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 SMCPP49901 116 aaPredicted RBP12.76□□□□□ -0.37
LINC00554-201ENST00000564841 ANXA2RQ3ZCQ2 193 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 LINC00312Q9Y6C7 94 aa12.76□□□□□ -0.37
LINC00554-201ENST00000564841 ZNF833PQ6ZTB9 187 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 HIST1H4GQ99525 98 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 DYNLRB1Q9NP97 96 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 LYNX1G3V0Z9 82 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 LYNX1P0DP58 116 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 MRGPRG-AS1Q2M3A8 158 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 HIGD1BQ9P298 99 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 IGLV3-9A0A075B6K5 115 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 IGFL4Q6B9Z1 124 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 GATD1Q8NB37 220 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 OR10X1Q8NGY0 326 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 TRGV9Q99603 122 aa12.75□□□□□ -0.37
LINC00554-201ENST00000564841 MRPL35Q9NZE8 188 aaKnown RBP12.75□□□□□ -0.37
LINC00554-201ENST00000564841 MYO18BQ8IUG5 2567 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 HOXB4P17483 251 aaPredicted RBP12.74□□□□□ -0.37
LINC00554-201ENST00000564841 CDSNQ15517 529 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 Q8TAT8 98 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 CTSZQ9UBR2 303 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 SH2D1AO60880 128 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 CRYGCP07315 174 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 FOXI1Q12951 378 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 OR4C13Q8NGP0 309 aa12.74□□□□□ -0.37
LINC00554-201ENST00000564841 ZNF418Q8TF45 676 aaPredicted RBP12.74□□□□□ -0.37
LINC00554-201ENST00000564841 TMEM158Q8WZ71 300 aa12.73□□□□□ -0.37
LINC00554-201ENST00000564841 HRNRQ86YZ3 2850 aaPredicted RBP12.73□□□□□ -0.37
LINC00554-201ENST00000564841 NDUFA3O95167 84 aa12.73□□□□□ -0.37
LINC00554-201ENST00000564841 SIGLEC15Q6ZMC9 328 aa12.73□□□□□ -0.37
LINC00554-201ENST00000564841 TRBV19A0A075B6N1 114 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 IGKV2-40A0A087WW87 121 aaPredicted RBP12.72□□□□□ -0.37
LINC00554-201ENST00000564841 TGFAP01135 160 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 IGKV2D-40P01614 121 aaPredicted RBP12.72□□□□□ -0.37
LINC00554-201ENST00000564841 RRN3P1Q2M238 152 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 TMEM200BQ69YZ2 307 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 CFAP46Q8IYW2 2715 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 CT45A10P0DMU9 189 aa12.72□□□□□ -0.37
LINC00554-201ENST00000564841 EGR2P11161 476 aaPredicted RBP12.72□□□□□ -0.37
LINC00554-201ENST00000564841 KLF17Q5JT82 389 aaPredicted RBP12.72□□□□□ -0.37
LINC00554-201ENST00000564841 ZMAT4Q9H898 229 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms