RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 SSX7Q7RTT5 188 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 TMEM256Q8N2U0 113 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 SUN5Q8TC36 379 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 SFT2D1Q8WV19 159 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 LINC01587Q99440 93 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 X6R8D5 127 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 TENM3Q9P273 2699 aa11.59□□□□□ -0.55
RAB40C-208ENST00000564703 A0A1W2PRE2 83 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 J3KRW8 73 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 DEFB4AO15263 64 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 H2AFB1P0C5Y9 115 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 FHITP49789 147 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 C1orf158Q8N1D5 194 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 C9orf62Q8N4C0 152 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 VGLL1Q99990 258 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 C20orf144Q9BQM9 153 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 NKX6-2Q9C056 277 aaPredicted RBP11.58□□□□□ -0.56
RAB40C-208ENST00000564703 TMPRSS5Q9H3S3 457 aa11.58□□□□□ -0.56
RAB40C-208ENST00000564703 DNAH9Q9NYC9 4486 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 IGHV4-28A0A0C4DH34 117 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 C3orf84H3BNL1 204 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 TEX46H3BTG2 121 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 CRXO43186 299 aaPredicted RBP11.57□□□□□ -0.56
RAB40C-208ENST00000564703 GPX1P07203 203 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 ZNF138P52744 262 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 RRN3P1Q2M238 152 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 C5orf17Q8NAS9 161 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 MBD3L1Q8WWY6 194 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 C11orf68Q9H3H3 251 aaKnown RBP11.57□□□□□ -0.56
RAB40C-208ENST00000564703 PLA2G2EQ9NZK7 142 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 ZNF492Q9P255 531 aa11.57□□□□□ -0.56
RAB40C-208ENST00000564703 STAB2Q8WWQ8 2551 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 SERTM2A0A1B0GWG4 89 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 TMEM189A5PLL7 270 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 IFNA7P01567 189 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 NMBP08949 121 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 HTN1P15515 57 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 UBE2G2P60604 165 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 GOLT1AQ6ZVE7 132 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 Q8NAQ8 132 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 C11orf45Q8TAV5 145 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 NIPSNAP3BQ9BS92 247 aa11.56□□□□□ -0.56
RAB40C-208ENST00000564703 RBMY1A1P0DJD3 496 aaKnown RBP11.55□□□□□ -0.56
RAB40C-208ENST00000564703 RBMY1CP0DJD4 496 aa11.55□□□□□ -0.56
RAB40C-208ENST00000564703 RBMY1FQ15415 496 aaKnown RBP11.55□□□□□ -0.56
RAB40C-208ENST00000564703 EPDR1Q9UM22 224 aa11.55□□□□□ -0.56
RAB40C-208ENST00000564703 TRAV12-3A0A0B4J271 114 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 TRBV7-9A0A0J9YWB2 115 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 CXorf65A6NEN9 183 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 F6UZH7 168 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 H7BYZ3 331 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 RNASE4P34096 147 aaKnown RBP11.54□□□□□ -0.56
RAB40C-208ENST00000564703 SULT1A2P50226 295 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 PPT1P50897 306 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 NKX2-5P52952 324 aaPredicted RBP11.54□□□□□ -0.56
RAB40C-208ENST00000564703 EMP1P54849 157 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 TAS2R60P59551 318 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 GNG5P63218 68 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 CST9LP1Q5W188 147 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 CCDC28AQ8IWP9 274 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 LENEPQ9Y5L5 61 aa11.54□□□□□ -0.56
RAB40C-208ENST00000564703 LOC102723971A0A1B0GUV8 181 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 A0A1B0GV50 99 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 C7orf71A4D174 169 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 ZNF705GA8MUZ8 300 aaPredicted RBP11.53□□□□□ -0.56
RAB40C-208ENST00000564703 TCRAP04437 139 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 CRISP2P16562 243 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 GFI1BQ5VTD9 330 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 NDFIP1Q9BT67 221 aa11.53□□□□□ -0.56
RAB40C-208ENST00000564703 FAM74A7A6NL05 159 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 SPART-AS1P0CW21 52 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 KIR3DS1Q14943 382 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 ZFAND6Q6FIF0 208 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 Q8TAT8 98 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 FAM19A4Q96LR4 140 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 ATG101Q9BSB4 218 aa11.52□□□□□ -0.57
RAB40C-208ENST00000564703 YTHDF2Q9Y5A9 579 aaKnown RBP11.52□□□□□ -0.57
RAB40C-208ENST00000564703 FBLL1A6NHQ2 334 aaKnown RBP11.51□□□□□ -0.57
RAB40C-208ENST00000564703 KLLNB2CW77 178 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 GGTLC3B5MD39 225 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 PAGE4O60829 102 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 CYB561D1Q8N8Q1 229 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 HIST1H2BAQ96A08 127 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 PYGO2Q9BRQ0 406 aa11.51□□□□□ -0.57
RAB40C-208ENST00000564703 TEX48A0A1B0GUV7 120 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 PMS2P11Q13670 270 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 ZNF493Q6ZR52 646 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 ZFAND2AQ8N6M9 145 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 TREM1Q9NP99 234 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 ARL2-SNX15V9GYD0 113 aa11.5□□□□□ -0.57
RAB40C-208ENST00000564703 TRAV8-1A0A0A6YYK1 113 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 TRAV1-1A0A0B4J248 108 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 RGS13O14921 159 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 NANOS2P60321 138 aaKnown RBP11.49□□□□□ -0.57
RAB40C-208ENST00000564703 BTN1A1Q13410 526 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 SAPCD1Q5SSQ6 148 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 CASC10Q5T4H9 136 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 ALKAL2Q6UX46 152 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 C16orf74Q96GX8 76 aa11.49□□□□□ -0.57
RAB40C-208ENST00000564703 SGK494Q96LW2 274 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms