RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 IGHV3-33P01772 117 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 OR4E1P0C645 316 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 IGHV3-30-3P0DP02 117 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 IGHV3-30-5P0DP03 117 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 VAMP1P23763 118 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 TNFSF8P32971 234 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 KRTAP10-4P60372 401 aaPredicted RBP4.85□□□□□ -1.63
VPS4A-203ENST00000564399 SLC38A11Q08AI6 406 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 WFDC2Q14508 124 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 LINC01556Q5JQF7 62 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 OR10J3Q5JRS4 329 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 SMIM4Q8WVI0 70 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 SAT2Q96F10 170 aaPredicted RBP4.85□□□□□ -1.63
VPS4A-203ENST00000564399 ZNF479Q96JC4 524 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 FUNDC2Q9BWH2 189 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 SLC25A31Q9H0C2 315 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 NPVFQ9HCQ7 196 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 DNAJC4Q9NNZ3 241 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 PSENENQ9NZ42 101 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 RABL2BQ9UNT1 228 aa4.85□□□□□ -1.63
VPS4A-203ENST00000564399 RBFOX3A6NFN3 312 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 M0R3E3 92 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 IGLV2-8P01709 118 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 HOXB5P09067 269 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 IGLC2P0DOY2 106 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 OPCMLQ14982 345 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 GUK1Q16774 197 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 TDRG1Q3Y452 100 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 MORN5Q5VZ52 161 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 C10orf113Q5VZT2 155 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 SH2D6Q7Z4S9 175 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 ZNF546Q86UE3 836 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 IQCF2Q8IXL9 164 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 OR10P1Q8NGE3 313 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 LINC00477Q96M19 166 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 CHAC1Q9BUX1 264 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 AGPAT4-IT1Q9H0P7 198 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 CCDC59Q9P031 241 aaKnown RBP4.84□□□□□ -1.63
VPS4A-203ENST00000564399 MGAT4CQ9UBM8 478 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 FAT3Q8TDW7 4589 aa4.84□□□□□ -1.63
VPS4A-203ENST00000564399 DNAH8Q96JB1 4490 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 A0A087WXM4 84 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 LOC100131303A0A0U1RQF7 123 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 ANKRD20A5PA0PJZ0 165 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 K7EPK0 472 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 AGPAT2O15120 278 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 CCNKO75909 580 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 METTL15P1P0C7V9 234 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 TIRAPP58753 221 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 POLR2GP62487 172 aaKnown RBP eCLIP4.83□□□□□ -1.64
VPS4A-203ENST00000564399 IL18Q14116 193 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 ACOT6Q3I5F7 207 aaPredicted RBP4.83□□□□□ -1.64
VPS4A-203ENST00000564399 C4orf46Q504U0 113 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM128Q5BJH2 165 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 Q6ZQT7 251 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 OR10G4Q8NGN3 311 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 CIRBP-AS1Q8TBR5 109 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM37Q8WXS4 190 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 SRRQ9GZT4 340 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 MIXL1Q9H2W2 232 aa4.83□□□□□ -1.64
VPS4A-203ENST00000564399 CTDSP2O14595 271 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 SSSCA1O60232 199 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 CRISP2P16562 243 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 RPL37AP61513 92 aaKnown RBP4.82□□□□□ -1.64
VPS4A-203ENST00000564399 ASAH1Q13510 395 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 ZNF846Q147U1 533 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 MUC21Q5SSG8 566 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM78Q5T7P6 136 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 PRR9Q5T870 116 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 OR4C5Q8NGB2 326 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 RAB2BQ8WUD1 216 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 BAALCQ8WXS3 180 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 MRPL53Q96EL3 112 aaKnown RBP4.82□□□□□ -1.64
VPS4A-203ENST00000564399 DIRAS2Q96HU8 199 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 FAM19A4Q96LR4 140 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 PRELID1Q9Y255 219 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 TIMM9Q9Y5J7 89 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 LRP2P98164 4655 aa4.82□□□□□ -1.64
VPS4A-203ENST00000564399 TRBV19A0A075B6N1 114 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 IGKV2-40A0A087WW87 121 aaPredicted RBP4.81□□□□□ -1.64
VPS4A-203ENST00000564399 TRAV4A0A0B4J268 109 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 IGHV3-16A0A0C4DH30 117 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 FABP12A6NFH5 140 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 FNDC10F2Z333 226 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 CTDSPLO15194 276 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 ZNF253O75346 499 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 SFT2D2O95562 160 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 IGKV2D-40P01614 121 aaPredicted RBP4.81□□□□□ -1.64
VPS4A-203ENST00000564399 PFN1P07737 140 aaKnown RBP4.81□□□□□ -1.64
VPS4A-203ENST00000564399 NMBP08949 121 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 HIST1H1EP10412 219 aaKnown RBP4.81□□□□□ -1.64
VPS4A-203ENST00000564399 ASIPP42127 132 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 ID3Q02535 119 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 LAGE3Q14657 143 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM183BQ1AE95 376 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 Q6ZRG5 221 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 C9orf47Q6ZRZ4 202 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM183AQ8IXX5 376 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 ZFAND2AQ8N6M9 145 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms