RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 LYPD1Q8N2G4 141 aa7.09□□□□□ -1.27
CLK3-208ENST00000562626 SGK494Q96LW2 274 aa7.09□□□□□ -1.27
CLK3-208ENST00000562626 ZMAT4Q9H898 229 aa7.09□□□□□ -1.27
CLK3-208ENST00000562626 EDA2RQ9HAV5 297 aa7.09□□□□□ -1.27
CLK3-208ENST00000562626 CSMD3Q7Z407 3707 aa7.09□□□□□ -1.27
CLK3-208ENST00000562626 J3KRW8 73 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 DEFB4AO15263 64 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 SLC25A5P05141 298 aaKnown RBP7.08□□□□□ -1.28
CLK3-208ENST00000562626 H2AFB1P0C5Y9 115 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 ATP5G3P48201 142 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 SUMO1P63165 101 aaKnown RBP7.08□□□□□ -1.28
CLK3-208ENST00000562626 DPPA3Q6W0C5 159 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 ZNF705AQ6ZN79 300 aaPredicted RBP7.08□□□□□ -1.28
CLK3-208ENST00000562626 GOLT1AQ6ZVE7 132 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 OR10J6PQ8NGY7 276 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 OR11H2Q8NH07 326 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 PCNPQ8WW12 178 aaKnown RBP7.08□□□□□ -1.28
CLK3-208ENST00000562626 TVP23CQ96ET8 276 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 TMEM167BQ9NRX6 74 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 TP53TG1Q9Y2A0 90 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 NACAE9PAV3 2078 aa7.08□□□□□ -1.28
CLK3-208ENST00000562626 A0A1W2PRE2 83 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 ZNF705EA8MWA4 302 aaPredicted RBP7.07□□□□□ -1.28
CLK3-208ENST00000562626 IGLV2-11P01706 119 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 TCRAP04437 139 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 GFI1BQ5VTD9 330 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 CCDC28AQ8IWP9 274 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 ZFAND2AQ8N6M9 145 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 Q8NAQ8 132 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 IGF2BP2-AS1Q96M15 143 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 LINC00479Q96M42 142 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 RARRES2Q99969 163 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 ZNF492Q9P255 531 aa7.07□□□□□ -1.28
CLK3-208ENST00000562626 IGHV3OR16-12A0A075B7B8 117 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 TRAV1-1A0A0B4J248 108 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 A0A0J9YWU9 116 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 KLLNB2CW77 178 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 PAGE4O60829 102 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 BTN1A1Q13410 526 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 EIF5AL1Q6IS14 154 aaKnown RBP7.06□□□□□ -1.28
CLK3-208ENST00000562626 C5orf17Q8NAS9 161 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 ODF3Q96PU9 254 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 EPDR1Q9UM22 224 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 MUC4Q99102 2169 aa7.06□□□□□ -1.28
CLK3-208ENST00000562626 TRAV34A0A0B4J273 112 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 IGHV4-28A0A0C4DH34 117 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 RBAKDNA6NC62 111 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 INSP01308 110 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 CRISP2P16562 243 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 AZU1P20160 251 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 CDKN1BP46527 198 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 CSN1S1P47710 185 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 RAB5CP51148 216 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 ZNF138P52744 262 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 NUTF2P61970 127 aaKnown RBP7.05□□□□□ -1.28
CLK3-208ENST00000562626 CMTM2Q8TAZ6 248 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 RXFP4Q8TDU9 374 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 LINC00477Q96M19 166 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 C8orf49Q96NF6 230 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 C1QTNF4Q9BXJ3 329 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 STARD9Q9P2P6 4700 aa7.05□□□□□ -1.28
CLK3-208ENST00000562626 DYNC2H1Q8NCM8 4307 aaKnown RBP7.04□□□□□ -1.28
CLK3-208ENST00000562626 TRAV12-3A0A0B4J271 114 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 ZNF705GA8MUZ8 300 aaPredicted RBP7.04□□□□□ -1.28
CLK3-208ENST00000562626 PEX7O00628 323 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 ZNF80P51504 273 aaPredicted RBP7.04□□□□□ -1.28
CLK3-208ENST00000562626 TMEM78Q5T7P6 136 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 CST9LP1Q5W188 147 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 PPP1R14DQ9NXH3 145 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 GNG13Q9P2W3 67 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 CELA1Q9UNI1 258 aa7.04□□□□□ -1.28
CLK3-208ENST00000562626 SCO2A0A1W2PP80 73 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 PLAC8L1A1L4L8 177 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 F6UZH7 168 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 ZNF324O75467 553 aaPredicted RBP7.03□□□□□ -1.28
CLK3-208ENST00000562626 IFNA7P01567 189 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 RNASE4P34096 147 aaKnown RBP7.03□□□□□ -1.28
CLK3-208ENST00000562626 LEPP41159 167 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 TEX261Q6UWH6 196 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 ARL6IP6Q8N6S5 226 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 CYB561D1Q8N8Q1 229 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 LYPD6BQ8NI32 183 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 ATG101Q9BSB4 218 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 PSG8Q9UQ74 426 aa7.03□□□□□ -1.28
CLK3-208ENST00000562626 HYDINQ4G0P3 5121 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 C7orf71A4D174 169 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 TEX46H3BTG2 121 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 AMBPP02760 352 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 GPX1P07203 203 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 FLI1Q01543 452 aaPredicted RBP7.02□□□□□ -1.29
CLK3-208ENST00000562626 PRNTQ86SH4 94 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 Q86TA4 180 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 TMEM75Q8N9X5 138 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 ZNF680Q8NEM1 530 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 C2CD4CQ8TF44 421 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 NEU1Q99519 415 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 DERL1Q9BUN8 251 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 TP53TG3Q9ULZ0 132 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 GOLT1BQ9Y3E0 138 aa7.02□□□□□ -1.29
CLK3-208ENST00000562626 ARL2-SNX15V9GYD0 113 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms