RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 UBE2DNLQ8IWF7 75 aa11.06□□□□□ -0.64
VPS39-203ENST00000561797 VGLL1Q99990 258 aa11.06□□□□□ -0.64
VPS39-203ENST00000561797 ATP5G1P05496 136 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 RNASE4P34096 147 aaKnown RBP11.05□□□□□ -0.64
VPS39-203ENST00000561797 ATP5G3P48201 142 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 CD300CQ08708 224 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 BTN1A1Q13410 526 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 ACOT6Q3I5F7 207 aaPredicted RBP11.05□□□□□ -0.64
VPS39-203ENST00000561797 KHDC3LQ587J8 217 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 TMEM78Q5T7P6 136 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 C9orf47Q6ZRZ4 202 aa11.05□□□□□ -0.64
VPS39-203ENST00000561797 EPPK1P58107 5090 aaKnown RBP11.05□□□□□ -0.64
VPS39-203ENST00000561797 CBY3A6NI87 242 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 SNURFLB1AK76 121 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 GPX1P07203 203 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 TAS2R45P59539 299 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 Q5BKY6 102 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 FAM19A4Q96LR4 140 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 PYGO2Q9BRQ0 406 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 Q9H3A6 140 aa11.04□□□□□ -0.64
VPS39-203ENST00000561797 A0A1W2PPV4 95 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 KLLNB2CW77 178 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 M6PRP20645 277 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 CSN1S1P47710 185 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 RAB2AP61019 212 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 ZNF492Q9P255 531 aa11.03□□□□□ -0.64
VPS39-203ENST00000561797 KMT2AQ03164 3969 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 GAGE12BA1L429 117 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 M0R2N4 97 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 ZNF324O75467 553 aaPredicted RBP11.02□□□□□ -0.65
VPS39-203ENST00000561797 GAGE7O76087 117 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 GAGE12FP0CL80 117 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 GAGE12GP0CL81 117 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 GAGE12IP0CL82 117 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 CRISP2P16562 243 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 LYPD1Q8N2G4 141 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 C15orf53Q8NAA6 179 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 HSD17B11Q8NBQ5 300 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 OR10G4Q8NGN3 311 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 OR10G9Q8NGN4 311 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 OR10G7Q8NGN6 311 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 Q8TAT8 98 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 AQP10Q96PS8 301 aa11.02□□□□□ -0.65
VPS39-203ENST00000561797 HMGB3O15347 200 aaKnown RBP11.01□□□□□ -0.65
VPS39-203ENST00000561797 NUDT3O95989 172 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 GIPP09681 153 aaPredicted RBP11.01□□□□□ -0.65
VPS39-203ENST00000561797 ZNF138P52744 262 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 ZNF266Q14584 549 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 PRR9Q5T870 116 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 Q6ZQT7 251 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 ZFAND2AQ8N6M9 145 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 HYLS1Q96M11 299 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 RPH3ALQ9UNE2 315 aa11.01□□□□□ -0.65
VPS39-203ENST00000561797 IGLV2-18A0A075B6J9 118 aa11□□□□□ -0.65
VPS39-203ENST00000561797 PGPA6NDG6 321 aa11□□□□□ -0.65
VPS39-203ENST00000561797 RGS21Q2M5E4 152 aa11□□□□□ -0.65
VPS39-203ENST00000561797 EIF4E3Q8N5X7 224 aaKnown RBP11□□□□□ -0.65
VPS39-203ENST00000561797 GSN-AS1Q9NRJ2 163 aa11□□□□□ -0.65
VPS39-203ENST00000561797 FXYD6-FXYD2A0A087WZ82 144 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 RBAKDNA6NC62 111 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 DIRC3C9JPN6 131 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 RGS13O14921 159 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 NMBP08949 121 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 ATP6V0CP27449 155 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 OR5I1Q13606 314 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 RNF212Q495C1 297 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 PQLC2Q6ZP29 291 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 Q6ZTI0 123 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 LINC00612Q8N6U2 182 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 INO80EQ8NBZ0 244 aaPredicted RBP10.99□□□□□ -0.65
VPS39-203ENST00000561797 RXFP4Q8TDU9 374 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 ATG101Q9BSB4 218 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 OTORQ9NRC9 128 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 VPS13DQ5THJ4 4388 aa10.99□□□□□ -0.65
VPS39-203ENST00000561797 CDC34P49427 236 aaPredicted RBP10.98□□□□□ -0.65
VPS39-203ENST00000561797 C11orf72Q8NBR9 251 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 ZNF680Q8NEM1 530 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 CMTM2Q8TAZ6 248 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 ASB13Q8WXK3 278 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 LINC00467Q9BRT7 94 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 PSMG3Q9BT73 122 aaPredicted RBP10.98□□□□□ -0.65
VPS39-203ENST00000561797 TP53TG3Q9ULZ0 132 aa10.98□□□□□ -0.65
VPS39-203ENST00000561797 ARL14EPLP0DKL9 152 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 DAZ2Q13117 558 aaKnown RBP10.97□□□□□ -0.65
VPS39-203ENST00000561797 ANXA2RQ3ZCQ2 193 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 FAM74A1Q5RGS3 127 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 OR2T35Q8NGX2 323 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 OR2G3Q8NGZ4 309 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 SH3BGRL3Q9H299 93 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 KLF12Q9Y4X4 402 aa10.97□□□□□ -0.65
VPS39-203ENST00000561797 IGHV1OR15-1A0A075B7D0 117 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 TRGV1A0A0A0MS02 117 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 TRBV7-9A0A0J9YWB2 115 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 A0A0J9YY99 117 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 RNF222A6NCQ9 220 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 HOXA5P20719 270 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 MUC21Q5SSG8 566 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 RPL7L1Q6DKI1 246 aaKnown RBP10.96□□□□□ -0.65
VPS39-203ENST00000561797 RAB24Q969Q5 203 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 ARPC5LQ9BPX5 153 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms