RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 BTN1A1Q13410 526 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 ICAM4Q14773 271 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 FAM122CQ6P4D5 195 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 LINC00299Q6ZSB3 139 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 Q6ZTI0 123 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 ZNF575Q86XF7 245 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 FAM167A-AS1Q96KT0 104 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 PYGO2Q9BRQ0 406 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 GSN-AS1Q9NRJ2 163 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 PRELID1Q9Y255 219 aa7.12□□□□□ -1.27
LDLR-214ENST00000560628 FAT2Q9NYQ8 4349 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 INMT-MINDY4F8WBC2 141 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 ZNF324O75467 553 aaPredicted RBP7.11□□□□□ -1.27
LDLR-214ENST00000560628 OR10J4P0C629 311 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 NBEAP1P0C6P0 100 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 TNP2Q05952 138 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 DAZ2Q13117 558 aaKnown RBP7.11□□□□□ -1.27
LDLR-214ENST00000560628 RXFP4Q8TDU9 374 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 FAM19A4Q96LR4 140 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 VGLL1Q99990 258 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 NMES1Q9C002 83 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 OR51M1Q9H341 326 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 TMPRSS5Q9H3S3 457 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 AAMDCQ9H7C9 122 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 Q9H8V8 135 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 DNAH2Q9P225 4427 aa7.11□□□□□ -1.27
LDLR-214ENST00000560628 DNAH17Q9UFH2 4485 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 TRGV2A0A075B6R0 118 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 A6NHS1 94 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 KLLNB2CW77 178 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 GPX1P07203 203 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 CYCSP99999 105 aaKnown RBP7.1□□□□□ -1.27
LDLR-214ENST00000560628 PDE6HQ13956 83 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 ESRGQ1W209 222 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 Q6ZQT7 251 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 C9orf47Q6ZRZ4 202 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 C6orf223Q8N319 242 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 PAXXQ9BUH6 204 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 WDR61Q9GZS3 305 aaKnown RBP7.1□□□□□ -1.27
LDLR-214ENST00000560628 TP53TG3Q9ULZ0 132 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 KLF12Q9Y4X4 402 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 KIAA1109Q2LD37 5005 aa7.1□□□□□ -1.27
LDLR-214ENST00000560628 TRGV1A0A0A0MS02 117 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 PRAF2O60831 178 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 H2BFSP57053 126 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 TMEM78Q5T7P6 136 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 PRR9Q5T870 116 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 EIF4E3Q8N5X7 224 aaKnown RBP7.09□□□□□ -1.27
LDLR-214ENST00000560628 ZFAND2AQ8N6M9 145 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 C11orf72Q8NBR9 251 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 PPP1R1CQ8WVI7 109 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 FXYD5Q96DB9 178 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 SMIM3Q9BZL3 60 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 FUT9Q9Y231 359 aa7.09□□□□□ -1.27
LDLR-214ENST00000560628 RGS13O14921 159 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 SSNA1O43805 119 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 OR7C2O60412 319 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 EIF3GO75821 320 aaKnown RBP eCLIP7.08□□□□□ -1.28
LDLR-214ENST00000560628 IGHV3-53P01767 116 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 CRISP2P16562 243 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 RANP62826 216 aaKnown RBP7.08□□□□□ -1.28
LDLR-214ENST00000560628 ANXA2RQ3ZCQ2 193 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 FFAR4Q5NUL3 377 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 ZNF680Q8NEM1 530 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 Q8TAT8 98 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 ZNF503Q96F45 646 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 PHYHIPLQ96FC7 376 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 VSIG2Q96IQ7 327 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 LINC00467Q9BRT7 94 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 MARVELD1Q9BSK0 173 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 ZNF492Q9P255 531 aa7.08□□□□□ -1.28
LDLR-214ENST00000560628 C17orf112F2Z3M2 114 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 H3BNG1 76 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 MPC2O95563 127 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 NMBP08949 121 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 CSN1S1P47710 185 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 ZNF138P52744 262 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 SCGB1C1Q8TD33 95 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 ATP5SQ99766 215 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 MRPL32Q9BYC8 188 aaKnown RBP7.07□□□□□ -1.28
LDLR-214ENST00000560628 KRTAP1-5Q9BYS1 174 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 KCNIP2Q9NS61 270 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 MRPL16Q9NX20 251 aaKnown RBP7.07□□□□□ -1.28
LDLR-214ENST00000560628 PTTG2Q9NZH5 202 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 HSPB11Q9Y547 144 aa7.07□□□□□ -1.28
LDLR-214ENST00000560628 PKHD1P08F94 4074 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 IGHV1OR15-1A0A075B7D0 117 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 A0A096LPF7 62 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 C16orf90A8MZG2 172 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 SPINK4O60575 86 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 IFNA5P01569 189 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 RPL12P30050 165 aaKnown RBP7.06□□□□□ -1.28
LDLR-214ENST00000560628 TCL1AP56279 114 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 MUC21Q5SSG8 566 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 HYLS1Q96M11 299 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 ARPC5LQ9BPX5 153 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 Q9H3A6 140 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 WFDC1Q9HC57 220 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 MUC4Q99102 2169 aa7.06□□□□□ -1.28
LDLR-214ENST00000560628 PAX4O43316 350 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms