RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TRAV12-2A0A075B6T6 113 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 ZNF705EA8MWA4 302 aaPredicted RBP15.82■□□□□ 0.12
SNX1-210ENST00000560260 RBMY1A1P0DJD3 496 aaKnown RBP15.82■□□□□ 0.12
SNX1-210ENST00000560260 RBMY1CP0DJD4 496 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 ATP5G3P48201 142 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 RBMY1FQ15415 496 aaKnown RBP15.82■□□□□ 0.12
SNX1-210ENST00000560260 GOLT1AQ6ZVE7 132 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 ARL6IP6Q8N6S5 226 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 ODF3Q96PU9 254 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 C1QTNF4Q9BXJ3 329 aa15.82■□□□□ 0.12
SNX1-210ENST00000560260 RBAKDNA6NC62 111 aa15.81■□□□□ 0.12
SNX1-210ENST00000560260 PAGE4O60829 102 aa15.81■□□□□ 0.12
SNX1-210ENST00000560260 TCRAP04437 139 aa15.81■□□□□ 0.12
SNX1-210ENST00000560260 C1orf158Q8N1D5 194 aa15.81■□□□□ 0.12
SNX1-210ENST00000560260 STAB2Q8WWQ8 2551 aa15.81■□□□□ 0.12
SNX1-210ENST00000560260 TRAV8-1A0A0A6YYK1 113 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 CCDC28AQ8IWP9 274 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 IGF2BP2-AS1Q96M15 143 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 LINC00477Q96M19 166 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 PPP1R14DQ9NXH3 145 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 ZNF492Q9P255 531 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 EPDR1Q9UM22 224 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 ARL2-SNX15V9GYD0 113 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 X6R8D5 127 aa15.8■□□□□ 0.12
SNX1-210ENST00000560260 AMBPP02760 352 aa15.79■□□□□ 0.12
SNX1-210ENST00000560260 CDKN1BP46527 198 aa15.79■□□□□ 0.12
SNX1-210ENST00000560260 TMEM78Q5T7P6 136 aa15.79■□□□□ 0.12
SNX1-210ENST00000560260 OR11H2Q8NH07 326 aa15.79■□□□□ 0.12
SNX1-210ENST00000560260 J3KRW8 73 aa15.78■□□□□ 0.12
SNX1-210ENST00000560260 HBE1P02100 147 aa15.78■□□□□ 0.12
SNX1-210ENST00000560260 ZNF138P52744 262 aa15.78■□□□□ 0.12
SNX1-210ENST00000560260 PRR9Q5T870 116 aa15.78■□□□□ 0.12
SNX1-210ENST00000560260 GFI1BQ5VTD9 330 aa15.78■□□□□ 0.12
SNX1-210ENST00000560260 ZNF705AQ6ZN79 300 aaPredicted RBP15.78■□□□□ 0.12
SNX1-210ENST00000560260 INSP01308 110 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 CRISP2P16562 243 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 LEPP41159 167 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 CST9LP1Q5W188 147 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 ZFAND2AQ8N6M9 145 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 SGK494Q96LW2 274 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 RARRES2Q99969 163 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 GNG13Q9P2W3 67 aa15.77■□□□□ 0.12
SNX1-210ENST00000560260 KLLNB2CW77 178 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 PEX7O00628 323 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 IFNA7P01567 189 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 IGLV2-11P01706 119 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 TEX261Q6UWH6 196 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 CYB561D1Q8N8Q1 229 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 ATG101Q9BSB4 218 aa15.76■□□□□ 0.11
SNX1-210ENST00000560260 IGHV3OR16-12A0A075B7B8 117 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 TSPOP30536 169 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 BTN1A1Q13410 526 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 ZNF680Q8NEM1 530 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 TVP23CQ96ET8 276 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 LINC00479Q96M42 142 aa15.75■□□□□ 0.11
SNX1-210ENST00000560260 NKX6-2Q9C056 277 aaPredicted RBP15.75■□□□□ 0.11
SNX1-210ENST00000560260 SERTM2A0A1B0GWG4 89 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 PPT1P50897 306 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 BLOC1S1P78537 153 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 Q8NAQ8 132 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 LYPD6BQ8NI32 183 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 EDA2RQ9HAV5 297 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 MANBALQ9NQG1 85 aa15.74■□□□□ 0.11
SNX1-210ENST00000560260 TRAV34A0A0B4J273 112 aa15.73■□□□□ 0.11
SNX1-210ENST00000560260 TEX46H3BTG2 121 aa15.73■□□□□ 0.11
SNX1-210ENST00000560260 PCNPQ8WW12 178 aaKnown RBP15.73■□□□□ 0.11
SNX1-210ENST00000560260 GOLT1BQ9Y3E0 138 aa15.73■□□□□ 0.11
SNX1-210ENST00000560260 DNAH7Q8WXX0 4024 aa15.73■□□□□ 0.11
SNX1-210ENST00000560260 IGHV4-28A0A0C4DH34 117 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 SCO2A0A1W2PP80 73 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 C7orf71A4D174 169 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 C11orf94C9JXX5 98 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 PRM2P04554 102 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 PMS2P11Q13670 270 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 Q6ZQT7 251 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 TMEM75Q8N9X5 138 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 HIST1H2BAQ96A08 127 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 PSG8Q9UQ74 426 aa15.72■□□□□ 0.11
SNX1-210ENST00000560260 TRAV12-3A0A0B4J271 114 aa15.71■□□□□ 0.11
SNX1-210ENST00000560260 TRBV7-9A0A0J9YWB2 115 aa15.71■□□□□ 0.11
SNX1-210ENST00000560260 A0A0J9YWU9 116 aa15.71■□□□□ 0.11
SNX1-210ENST00000560260 DEFB4AO15263 64 aa15.71■□□□□ 0.11
SNX1-210ENST00000560260 LENEPQ9Y5L5 61 aa15.71■□□□□ 0.11
SNX1-210ENST00000560260 F6UZH7 168 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 NMBP08949 121 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 BCL2P10415 239 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 FLI1Q01543 452 aaPredicted RBP15.7■□□□□ 0.1
SNX1-210ENST00000560260 Q86TA4 180 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 NEU1Q99519 415 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 TCEAL7Q9BRU2 100 aa15.7■□□□□ 0.1
SNX1-210ENST00000560260 K7EQM0 130 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 GPX1P07203 203 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 MIFP14174 115 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 RNASE4P34096 147 aaKnown RBP15.69■□□□□ 0.1
SNX1-210ENST00000560260 PRNTQ86SH4 94 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 C2CD4CQ8TF44 421 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 C8orf49Q96NF6 230 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 TMEM208Q9BTX3 173 aa15.69■□□□□ 0.1
SNX1-210ENST00000560260 LOC102723971A0A1B0GUV8 181 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 ZNF705GA8MUZ8 300 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 148.7 ms