RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FXYD5Q96DB9 178 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 PHYHIPLQ96FC7 376 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 C20orf144Q9BQM9 153 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 MARVELD1Q9BSK0 173 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 WDR61Q9GZS3 305 aaKnown RBP12.36□□□□□ -0.43
HDDC3-205ENST00000559898 TIMM9Q9Y5J7 89 aa12.36□□□□□ -0.43
HDDC3-205ENST00000559898 ZNF324O75467 553 aaPredicted RBP12.35□□□□□ -0.43
HDDC3-205ENST00000559898 Q6ZTI0 123 aa12.35□□□□□ -0.43
HDDC3-205ENST00000559898 C11orf72Q8NBR9 251 aa12.35□□□□□ -0.43
HDDC3-205ENST00000559898 MRPL53Q96EL3 112 aaKnown RBP12.35□□□□□ -0.43
HDDC3-205ENST00000559898 ODF3Q96PU9 254 aa12.35□□□□□ -0.43
HDDC3-205ENST00000559898 SMIM3Q9BZL3 60 aa12.35□□□□□ -0.43
HDDC3-205ENST00000559898 TP53TG3Q9ULZ0 132 aa12.35□□□□□ -0.43
HDDC3-205ENST00000559898 C7orf71A4D174 169 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 KLLNB2CW77 178 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 MPDU1O75352 247 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 OR5I1Q13606 314 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 ATG101Q9BSB4 218 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 SLC25A31Q9H0C2 315 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 TMPRSS5Q9H3S3 457 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 WFDC1Q9HC57 220 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 GSN-AS1Q9NRJ2 163 aa12.34□□□□□ -0.43
HDDC3-205ENST00000559898 TRAV26-1A0A087WT03 109 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 PRAF2O60831 178 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 RLN2P04090 185 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 RNASE4P34096 147 aaKnown RBP12.33□□□□□ -0.44
HDDC3-205ENST00000559898 ZFAND2AQ8N6M9 145 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 Q8TAT8 98 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 OR51M1Q9H341 326 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 KLF12Q9Y4X4 402 aa12.33□□□□□ -0.44
HDDC3-205ENST00000559898 PCLOQ9Y6V0 5065 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 MPC2O95563 127 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 NBEAP1P0C6P0 100 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 PDE6HQ13956 83 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 ZNF575Q86XF7 245 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 CCDC28AQ8IWP9 274 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 PAXXQ9BUH6 204 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 KRTAP1-5Q9BYS1 174 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 HSPB11Q9Y547 144 aa12.32□□□□□ -0.44
HDDC3-205ENST00000559898 SLC25A5P05141 298 aaKnown RBP12.31□□□□□ -0.44
HDDC3-205ENST00000559898 TNP2Q05952 138 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 C1orf134Q5TEV5 83 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 C9orf47Q6ZRZ4 202 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 ATP5SQ99766 215 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 PYGO2Q9BRQ0 406 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 MBD2Q9UBB5 411 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 FUT9Q9Y231 359 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 PRELID1Q9Y255 219 aa12.31□□□□□ -0.44
HDDC3-205ENST00000559898 NBDYA0A0U1RRE5 68 aa12.3□□□□□ -0.44
HDDC3-205ENST00000559898 SNURFLB1AK76 121 aa12.3□□□□□ -0.44
HDDC3-205ENST00000559898 SSNA1O43805 119 aa12.3□□□□□ -0.44
HDDC3-205ENST00000559898 SSX7Q7RTT5 188 aa12.3□□□□□ -0.44
HDDC3-205ENST00000559898 LINC00477Q96M19 166 aa12.3□□□□□ -0.44
HDDC3-205ENST00000559898 CRISP2P16562 243 aa12.29□□□□□ -0.44
HDDC3-205ENST00000559898 ESRGQ1W209 222 aa12.29□□□□□ -0.44
HDDC3-205ENST00000559898 FFAR4Q5NUL3 377 aa12.29□□□□□ -0.44
HDDC3-205ENST00000559898 GNPNAT1Q96EK6 184 aaPredicted RBP12.29□□□□□ -0.44
HDDC3-205ENST00000559898 VSIG2Q96IQ7 327 aa12.29□□□□□ -0.44
HDDC3-205ENST00000559898 ZNF492Q9P255 531 aa12.29□□□□□ -0.44
HDDC3-205ENST00000559898 OR7C2O60412 319 aa12.28□□□□□ -0.44
HDDC3-205ENST00000559898 GPX1P07203 203 aa12.28□□□□□ -0.44
HDDC3-205ENST00000559898 RPL12P30050 165 aaKnown RBP12.28□□□□□ -0.44
HDDC3-205ENST00000559898 RANP62826 216 aaKnown RBP12.28□□□□□ -0.44
HDDC3-205ENST00000559898 CYCSP99999 105 aaKnown RBP12.28□□□□□ -0.44
HDDC3-205ENST00000559898 DAZ2Q13117 558 aaKnown RBP12.28□□□□□ -0.44
HDDC3-205ENST00000559898 RXFP4Q8TDU9 374 aa12.28□□□□□ -0.44
HDDC3-205ENST00000559898 MRPL32Q9BYC8 188 aaKnown RBP12.28□□□□□ -0.44
HDDC3-205ENST00000559898 AAMDCQ9H7C9 122 aa12.28□□□□□ -0.44
HDDC3-205ENST00000559898 RYR1P21817 5038 aa12.28□□□□□ -0.44
HDDC3-205ENST00000559898 M6PRP20645 277 aa12.27□□□□□ -0.45
HDDC3-205ENST00000559898 FAM3BP58499 235 aaPredicted RBP12.27□□□□□ -0.45
HDDC3-205ENST00000559898 EIF4E3Q8N5X7 224 aaKnown RBP12.27□□□□□ -0.45
HDDC3-205ENST00000559898 Q9H3A6 140 aa12.27□□□□□ -0.45
HDDC3-205ENST00000559898 MRPL16Q9NX20 251 aaKnown RBP12.27□□□□□ -0.45
HDDC3-205ENST00000559898 TRGV1A0A0A0MS02 117 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 IGHV3-53P01767 116 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 CCL18P55774 89 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 ANXA2RQ3ZCQ2 193 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 TMEM78Q5T7P6 136 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 LINC00467Q9BRT7 94 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 ALG5Q9Y673 324 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 MUC4Q99102 2169 aa12.26□□□□□ -0.45
HDDC3-205ENST00000559898 A0A096LPF7 62 aa12.25□□□□□ -0.45
HDDC3-205ENST00000559898 C17orf112F2Z3M2 114 aa12.25□□□□□ -0.45
HDDC3-205ENST00000559898 SPINK4O60575 86 aa12.25□□□□□ -0.45
HDDC3-205ENST00000559898 TCL1AP56279 114 aa12.25□□□□□ -0.45
HDDC3-205ENST00000559898 UBE2L3P68036 154 aaKnown RBP12.25□□□□□ -0.45
HDDC3-205ENST00000559898 MUC21Q5SSG8 566 aa12.25□□□□□ -0.45
HDDC3-205ENST00000559898 IGHV1OR15-1A0A075B7D0 117 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 HMGB3O15347 200 aaKnown RBP12.24□□□□□ -0.45
HDDC3-205ENST00000559898 ZNF138P52744 262 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 DEFA1P59665 94 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 DEFA3P59666 94 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 RAB2AP61019 212 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 C6orf223Q8N319 242 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 Q9H8V8 135 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 LRP1BQ9NZR2 4599 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 HSPG2P98160 4391 aa12.24□□□□□ -0.45
HDDC3-205ENST00000559898 TRGV2A0A075B6R0 118 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 RGS13O14921 159 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms