RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CRXO43186 299 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-227ENST00000557269 IGLV2-11P01706 119 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 NMBP08949 121 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 PPT1P50897 306 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 PMS2P11Q13670 270 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 DEFB135Q30KP9 77 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 ARL6IP6Q8N6S5 226 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 CSNK1G2-AS1Q8NCQ2 148 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 TM2D3Q9BRN9 247 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 MANBALQ9NQG1 85 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 ARL2-SNX15V9GYD0 113 aa9.35□□□□□ -0.91
SHMT2-227ENST00000557269 TRAV12-2A0A075B6T6 113 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 TRAV34A0A0B4J273 112 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 C11orf94C9JXX5 98 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 PEX7O00628 323 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 TVP23CQ96ET8 276 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 LINC00477Q96M19 166 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 RARRES2Q99969 163 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 ATG101Q9BSB4 218 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 NKX6-2Q9C056 277 aaPredicted RBP9.34□□□□□ -0.91
SHMT2-227ENST00000557269 ZNF492Q9P255 531 aa9.34□□□□□ -0.91
SHMT2-227ENST00000557269 DNAH9Q9NYC9 4486 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 LOC102723971A0A1B0GUV8 181 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 SCO2A0A1W2PP80 73 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 J3KRW8 73 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 UBE2CO00762 179 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 RBMY1A1P0DJD3 496 aaKnown RBP9.33□□□□□ -0.92
SHMT2-227ENST00000557269 RBMY1CP0DJD4 496 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 BCL2P10415 239 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 ZNF138P52744 262 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 NUTF2P61970 127 aaKnown RBP9.33□□□□□ -0.92
SHMT2-227ENST00000557269 RBMY1FQ15415 496 aaKnown RBP9.33□□□□□ -0.92
SHMT2-227ENST00000557269 TMEM78Q5T7P6 136 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 PRR9Q5T870 116 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 Q6ZWC4 215 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 CYB561D1Q8N8Q1 229 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 OVOL2Q9BRP0 275 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 PPP1R14DQ9NXH3 145 aa9.33□□□□□ -0.92
SHMT2-227ENST00000557269 Q6ZQT7 251 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 C1orf158Q8N1D5 194 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 ZFAND2AQ8N6M9 145 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 HIST1H2BAQ96A08 127 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 RNF183Q96D59 192 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 ODF3Q96PU9 254 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 VAX2Q9UIW0 290 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 PSG8Q9UQ74 426 aa9.32□□□□□ -0.92
SHMT2-227ENST00000557269 SERTM2A0A1B0GWG4 89 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 RBFOX3A6NFN3 312 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 SPRY2O43597 315 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 IFNA1P01562 189 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 LEPP41159 167 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 CDKN1BP46527 198 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 GFI1BQ5VTD9 330 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 PRNTQ86SH4 94 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 TMEM75Q8N9X5 138 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 C2CD4CQ8TF44 421 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 IGF2BP2-AS1Q96M15 143 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 RCHY1Q96PM5 261 aa9.31□□□□□ -0.92
SHMT2-227ENST00000557269 KLLNB2CW77 178 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 PRM2P04554 102 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 CRISP2P16562 243 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 TSPOP30536 169 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 FLI1Q01543 452 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-227ENST00000557269 MEF2BQ02080 365 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-227ENST00000557269 BTN1A1Q13410 526 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 ZNF506Q5JVG8 444 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 ZNF767PQ75MW2 155 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 C8orf49Q96NF6 230 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 SPATA25Q9BR10 227 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 TCEAL7Q9BRU2 100 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 DERL1Q9BUN8 251 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 C1QTNF4Q9BXJ3 329 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 KLF12Q9Y4X4 402 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 NBEAL2Q6ZNJ1 2754 aa9.3□□□□□ -0.92
SHMT2-227ENST00000557269 HUWE1Q7Z6Z7 4374 aaKnown RBP9.3□□□□□ -0.92
SHMT2-227ENST00000557269 IGHV3OR16-12A0A075B7B8 117 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 TRAV12-3A0A0B4J271 114 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 F6UZH7 168 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 K7EQM0 130 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 AMBPP02760 352 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 NHLRC4P0CG21 123 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-227ENST00000557269 RNASE4P34096 147 aaKnown RBP9.29□□□□□ -0.92
SHMT2-227ENST00000557269 SRSF3P84103 164 aaKnown RBP9.29□□□□□ -0.92
SHMT2-227ENST00000557269 TOR2AQ5JU69 321 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 ZNF705AQ6ZN79 300 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-227ENST00000557269 Q86TA4 180 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 OR11H2Q8NH07 326 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 C11orf52Q96A22 123 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 FAM210AQ96ND0 272 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 TP53TG1Q9Y2A0 90 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 X6R8D5 127 aa9.29□□□□□ -0.92
SHMT2-227ENST00000557269 TRBV7-9A0A0J9YWB2 115 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 C7orf71A4D174 169 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 INSP01308 110 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 GPX1P07203 203 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 AKR1C3P42330 323 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 TMEM183BQ1AE95 376 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 CLLU1Q5K131 121 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 TXNDC17Q9BRA2 123 aa9.28□□□□□ -0.92
SHMT2-227ENST00000557269 ZMAT4Q9H898 229 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms