RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 FAM74A1Q5RGS3 127 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 ZNF705AQ6ZN79 300 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-225ENST00000556798 C9orf47Q6ZRZ4 202 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 Q8NAQ8 132 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 Q8TAT8 98 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 GOLT1BQ9Y3E0 138 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 BOLA1Q9Y3E2 137 aa12.66□□□□□ -0.38
SHMT2-225ENST00000556798 GGTLC3B5MD39 225 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 SLC25A5P05141 298 aaKnown RBP12.65□□□□□ -0.38
SHMT2-225ENST00000556798 TMEM78Q5T7P6 136 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 EIF5AL1Q6IS14 154 aaKnown RBP12.65□□□□□ -0.38
SHMT2-225ENST00000556798 DPPA3Q6W0C5 159 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 RXFP4Q8TDU9 374 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 ODF3Q96PU9 254 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 YTHDF2Q9Y5A9 579 aaKnown RBP12.65□□□□□ -0.38
SHMT2-225ENST00000556798 DNAH7Q8WXX0 4024 aa12.65□□□□□ -0.38
SHMT2-225ENST00000556798 TSPOP30536 169 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 LEPP41159 167 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 GFI1BQ5VTD9 330 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 GOLT1AQ6ZVE7 132 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 SFT2D1Q8WV19 159 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 LINC00477Q96M19 166 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 TMEM208Q9BTX3 173 aa12.64□□□□□ -0.39
SHMT2-225ENST00000556798 MIFP14174 115 aa12.63□□□□□ -0.39
SHMT2-225ENST00000556798 SUMO1P63165 101 aaKnown RBP12.63□□□□□ -0.39
SHMT2-225ENST00000556798 C5orf17Q8NAS9 161 aa12.63□□□□□ -0.39
SHMT2-225ENST00000556798 MBD3L1Q8WWY6 194 aa12.63□□□□□ -0.39
SHMT2-225ENST00000556798 ZNF492Q9P255 531 aa12.63□□□□□ -0.39
SHMT2-225ENST00000556798 A0A1W2PRE2 83 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 RBAKDNA6NC62 111 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 FAM74A7A6NL05 159 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 PRM2P04554 102 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 H2AFB1P0C5Y9 115 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 SULT1A2P50226 295 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 ZNF138P52744 262 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 FAM19A4Q96LR4 140 aa12.62□□□□□ -0.39
SHMT2-225ENST00000556798 C11orf68Q9H3H3 251 aaKnown RBP12.62□□□□□ -0.39
SHMT2-225ENST00000556798 TRAV8-1A0A0A6YYK1 113 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 TCRAP04437 139 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 RAB5CP51148 216 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 BTN1A1Q13410 526 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 PRR9Q5T870 116 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 MUC7Q8TAX7 377 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 SGK494Q96LW2 274 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 NEU1Q99519 415 aa12.61□□□□□ -0.39
SHMT2-225ENST00000556798 TRAV12-3A0A0B4J271 114 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 ZNF705GA8MUZ8 300 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-225ENST00000556798 HBE1P02100 147 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 ALKAL2Q6UX46 152 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 ZFAND2AQ8N6M9 145 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 IL17DQ8TAD2 202 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 LINC01587Q99440 93 aa12.6□□□□□ -0.39
SHMT2-225ENST00000556798 C7orf71A4D174 169 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 KLLNB2CW77 178 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 IFNA7P01567 189 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 HTN1P15515 57 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 CRISP2P16562 243 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 RNASE4P34096 147 aaKnown RBP12.59□□□□□ -0.39
SHMT2-225ENST00000556798 EMP1P54849 157 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 RRN3P1Q2M238 152 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 ZFAND6Q6FIF0 208 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 ARL6IP6Q8N6S5 226 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 EPDR1Q9UM22 224 aa12.59□□□□□ -0.39
SHMT2-225ENST00000556798 LOC102723971A0A1B0GUV8 181 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 SMIM9A6NGZ8 99 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 PAGE4O60829 102 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 GPX1P07203 203 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 ATP5G3P48201 142 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 CST9LP1Q5W188 147 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 TMEM256Q8N2U0 113 aa12.58□□□□□ -0.4
SHMT2-225ENST00000556798 CCL20P78556 96 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 PMS2P11Q13670 270 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 Q6ZQT7 251 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 CYB561D1Q8N8Q1 229 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 C20orf144Q9BQM9 153 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 NIPSNAP3BQ9BS92 247 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 ATG101Q9BSB4 218 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 CELA1Q9UNI1 258 aa12.57□□□□□ -0.4
SHMT2-225ENST00000556798 SERTM2A0A1B0GWG4 89 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 H7BYZ3 331 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 K7EQM0 130 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 PEX7O00628 323 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 AZU1P20160 251 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 NANOS2P60321 138 aaKnown RBP12.56□□□□□ -0.4
SHMT2-225ENST00000556798 C11orf45Q8TAV5 145 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 TVP23CQ96ET8 276 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 LINC00479Q96M42 142 aa12.56□□□□□ -0.4
SHMT2-225ENST00000556798 NKX6-2Q9C056 277 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-225ENST00000556798 TRAV34A0A0B4J273 112 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 TRBV7-9A0A0J9YWB2 115 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 F6UZH7 168 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 IGLV2-11P01706 119 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 NMBP08949 121 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 TAS2R60P59551 318 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 CCDC28AQ8IWP9 274 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 GNG13Q9P2W3 67 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 PSG8Q9UQ74 426 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 LENEPQ9Y5L5 61 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 ARL2-SNX15V9GYD0 113 aa12.55□□□□□ -0.4
SHMT2-225ENST00000556798 CSMD3Q7Z407 3707 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms