RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 LBHQ53QV2 105 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-220ENST00000556486 TMEM14EPQ6UXP3 125 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 TMEM263Q8WUH6 116 aaKnown RBP6.94□□□□□ -1.3
SCFD1-220ENST00000556486 SMIM8Q96KF7 97 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 KRTAP9-3Q9BYQ3 159 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 NPVFQ9HCQ7 196 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 LINC00588Q9Y4M8 146 aa6.94□□□□□ -1.3
SCFD1-220ENST00000556486 VPS13BQ7Z7G8 4022 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 C9orf170A2RU37 121 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 F5H768 121 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 H3BNG1 76 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 H7BYZ3 331 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 NOL3O60936 208 aaKnown RBP6.93□□□□□ -1.3
SCFD1-220ENST00000556486 XGP55808 180 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 TAS2R30P59541 319 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 POLR2GP62487 172 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCFD1-220ENST00000556486 HIST1H1AQ02539 215 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-220ENST00000556486 PYDC2Q56P42 97 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 LCN15Q6UWW0 184 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 PATE2Q6UY27 113 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 LYPD1Q8N2G4 141 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 UHRF2Q96PU4 802 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 LINC01587Q99440 93 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 GGACTQ9BVM4 153 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF331Q9NQX6 463 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-220ENST00000556486 PAM16Q9Y3D7 125 aa6.93□□□□□ -1.3
SCFD1-220ENST00000556486 TSC22D2O75157 780 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 ADAP1O75689 374 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 NDUFB6O95139 128 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 OR5G3P0C626 314 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 FGL1Q08830 312 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 FCN2Q15485 313 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 LCE5AQ5TCM9 118 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 OR10J6PQ8NGY7 276 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 RPUSD4Q96CM3 377 aaKnown RBP6.92□□□□□ -1.3
SCFD1-220ENST00000556486 SLC50A1Q9BRV3 221 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 UPK3BQ9BT76 320 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 KRTAP4-2Q9BYR5 136 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 ARV1Q9H2C2 271 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 PSENENQ9NZ42 101 aa6.92□□□□□ -1.3
SCFD1-220ENST00000556486 SMCO3A2RU48 225 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 NAP1L6A6NFF2 107 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 SSSCA1O60232 199 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 RHOBP62745 196 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 TTC32Q5I0X7 151 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 SSX7Q7RTT5 188 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF546Q86UE3 836 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 OR10P1Q8NGE3 313 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 RXFP4Q8TDU9 374 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 FRZBQ92765 325 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 ODF3Q96PU9 254 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 SRRQ9GZT4 340 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 ARL6Q9H0F7 186 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 Q9H3A6 140 aa6.91□□□□□ -1.3
SCFD1-220ENST00000556486 CCNKO75909 580 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 OR4E1P0C645 316 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 METTL15P1P0C7V9 234 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 IGLC2P0DOY2 106 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 M6PRP20645 277 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 S100A5P33763 92 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 LINC00305Q7Z4B0 112 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 BPIFA4PQ86YQ2 179 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 LRRC20Q8TCA0 184 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 Q9H8V8 135 aa6.9□□□□□ -1.3
SCFD1-220ENST00000556486 NOP10Q9NPE3 64 aaKnown RBP6.9□□□□□ -1.3
SCFD1-220ENST00000556486 RCL1Q9Y2P8 373 aaKnown RBP6.9□□□□□ -1.3
SCFD1-220ENST00000556486 ZNF701M0R085 212 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-220ENST00000556486 AGPAT2O15120 278 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 SLC38A11Q08AI6 406 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 DAZ2Q13117 558 aaKnown RBP6.89□□□□□ -1.31
SCFD1-220ENST00000556486 CLINT1Q14677 625 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 SPANXN2Q5MJ10 180 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 GFI1BQ5VTD9 330 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 NRARPQ7Z6K4 114 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 MITD1Q8WV92 249 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 TMEM37Q8WXS4 190 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 GNPNAT1Q96EK6 184 aaPredicted RBP6.89□□□□□ -1.31
SCFD1-220ENST00000556486 PXMP4Q9Y6I8 212 aa6.89□□□□□ -1.31
SCFD1-220ENST00000556486 TRAV26-1A0A087WT03 109 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 C7orf66A4D0T2 115 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 C5orf51A6NDU8 294 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 GOSR2O14653 212 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 ZNF253O75346 499 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 HTN1P15515 57 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 KRTAP10-1P60331 282 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 RRAS2P62070 204 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-220ENST00000556486 ARL16Q0P5N6 197 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 GUK1Q16774 197 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 IAH1Q2TAA2 248 aaPredicted RBP6.88□□□□□ -1.31
SCFD1-220ENST00000556486 CNPY1Q3B7I2 92 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 THAP6Q8TBB0 222 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 MGST2Q99735 147 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 PYGO2Q9BRQ0 406 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 KRTAP4-11Q9BYQ6 195 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 RBM38Q9H0Z9 239 aaKnown RBP6.88□□□□□ -1.31
SCFD1-220ENST00000556486 DNAJC4Q9NNZ3 241 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 ZNF586Q9NXT0 402 aa6.88□□□□□ -1.31
SCFD1-220ENST00000556486 MRPS16Q9Y3D3 137 aaKnown RBP6.88□□□□□ -1.31
SCFD1-220ENST00000556486 HMCN2Q8NDA2 5059 aa6.87□□□□□ -1.31
SCFD1-220ENST00000556486 PRAC2D3DTV9 90 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms