RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 NUP35Q8NFH5 326 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 PRR25Q96S07 402 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 VGLL1Q99990 258 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 RHPN1-AS1Q9BWJ2 59 aa11.2□□□□□ -0.62
VPS33B-205ENST00000556096 FAM181BA6NEQ2 426 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 MT-ND6P03923 174 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 CT45A10P0DMU9 189 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 CRIP1P50238 77 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 REC114Q7Z4M0 266 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 RNF182Q8N6D2 247 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 KLHDC1Q8N7A1 406 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 WIPF2Q8TF74 440 aaPredicted RBP11.19□□□□□ -0.62
VPS33B-205ENST00000556096 C16orf92Q96LL3 132 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 NEU1Q99519 415 aa11.19□□□□□ -0.62
VPS33B-205ENST00000556096 LGALS9O00182 355 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 PRB4P10163 310 aaPredicted RBP11.18□□□□□ -0.62
VPS33B-205ENST00000556096 BMI1P35226 326 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 Q6ZSV7 163 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 C8orf49Q96NF6 230 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 HIGD1CA8MV81 97 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 PRAC2D3DTV9 90 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 SOCS3O14543 225 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 CBLN1P23435 193 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 CDX1P47902 265 aaPredicted RBP11.18□□□□□ -0.62
VPS33B-205ENST00000556096 COA6Q5JTJ3 125 aaKnown RBP11.18□□□□□ -0.62
VPS33B-205ENST00000556096 ATP5L2Q7Z4Y8 100 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 OR2D3Q8NGH3 330 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 NDFIP1Q9BT67 221 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 NRN1Q9NPD7 142 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 PPP1R14DQ9NXH3 145 aa11.18□□□□□ -0.62
VPS33B-205ENST00000556096 JMJD1CQ15652 2540 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 A8MWP6 167 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 SNURFLB1AK76 121 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 SPINK4O60575 86 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 FRMD6-AS1P0C7T7 363 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 FOXA3P55318 350 aaPredicted RBP11.17□□□□□ -0.62
VPS33B-205ENST00000556096 TMEM136Q6ZRR5 245 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 ASCL2Q99929 193 aa11.17□□□□□ -0.62
VPS33B-205ENST00000556096 MRPL18Q9H0U6 180 aaKnown RBP11.17□□□□□ -0.62
VPS33B-205ENST00000556096 IGHV4OR15-8A0A075B7B6 117 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 A0A087WW49 117 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 FAM162BQ5T6X4 162 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 MRPL54Q6P161 138 aaKnown RBP11.16□□□□□ -0.62
VPS33B-205ENST00000556096 C9orf47Q6ZRZ4 202 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 TCF24Q7RTU0 167 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 PRIMA1Q86XR5 153 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 ZNF418Q8TF45 676 aaPredicted RBP11.16□□□□□ -0.62
VPS33B-205ENST00000556096 GTSF1Q8WW33 167 aa11.16□□□□□ -0.62
VPS33B-205ENST00000556096 TMEM213A2RRL7 107 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 HLA-DQA1P01909 254 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 AKR1D1P51857 326 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 ERCC8Q13216 396 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 SMUG1Q53HV7 270 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 SAMD13Q5VXD3 122 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 RBPMS2Q6ZRY4 209 aaKnown RBP11.15□□□□□ -0.62
VPS33B-205ENST00000556096 WFDC12Q8WWY7 111 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 AGPAT4-IT1Q9H0P7 198 aa11.15□□□□□ -0.62
VPS33B-205ENST00000556096 RNASE1P07998 156 aaKnown RBP11.15□□□□□ -0.63
VPS33B-205ENST00000556096 TMEM78Q5T7P6 136 aa11.15□□□□□ -0.63
VPS33B-205ENST00000556096 Q8TAT8 98 aa11.15□□□□□ -0.63
VPS33B-205ENST00000556096 C20orf173Q96LM9 149 aa11.15□□□□□ -0.63
VPS33B-205ENST00000556096 A0A1B0GXF2 115 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 XKRY2A2RUG3 117 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 OVOL1O14753 267 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 SH2D1AO60880 128 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 HOXD3P31249 432 aaPredicted RBP11.14□□□□□ -0.63
VPS33B-205ENST00000556096 ZNF138P52744 262 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 HILS1P60008 231 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 RPL11P62913 178 aaKnown RBP11.14□□□□□ -0.63
VPS33B-205ENST00000556096 KLF5Q13887 457 aaPredicted RBP11.14□□□□□ -0.63
VPS33B-205ENST00000556096 HIST3H2BBQ8N257 126 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 C4orf3Q8WVX3 66 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 GPR61Q9BZJ8 451 aa11.14□□□□□ -0.63
VPS33B-205ENST00000556096 S100A8P05109 93 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 SYNJ2BPP57105 145 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 TCTEX1D4Q5JR98 221 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 ZNF738Q8NE65 137 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 C16orf95Q9H693 158 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 LENEPQ9Y5L5 61 aa11.13□□□□□ -0.63
VPS33B-205ENST00000556096 FABP5P3A8MUU1 101 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 TCF21O43680 179 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 EDN2P20800 178 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 ZNF80P51504 273 aaPredicted RBP11.12□□□□□ -0.63
VPS33B-205ENST00000556096 RAB4BP61018 213 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 Q6AWC8 147 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 PGLYRP4Q96LB8 373 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 LINC00477Q96M19 166 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 TMEM189A5PLL7 270 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 IFITM10A6NMD0 228 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 GZMBP10144 247 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 RPS20P60866 119 aaKnown RBP11.12□□□□□ -0.63
VPS33B-205ENST00000556096 HBBP68871 147 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 GFI1BQ5VTD9 330 aa11.12□□□□□ -0.63
VPS33B-205ENST00000556096 LINC01619G3V211 115 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 HAX1O00165 279 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 APCSP02743 223 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 ID1P41134 155 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 GDF5OSQ5U4N7 250 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 C18orf65Q6ZTR6 163 aa11.11□□□□□ -0.63
VPS33B-205ENST00000556096 DCANP1Q8TF63 244 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms