RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 NABP2Q9BQ15 211 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 C19orf12Q9NSK7 152 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 LAMTOR3Q9UHA4 124 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TNFSF18Q9UNG2 199 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 ARHGEF10O15013 1369 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TCOF1Q13428 1488 aaKnown RBP0.64□□□□□ -2.31
SCFD1-217ENST00000555953 ARAP1Q96P48 1450 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 SYNJ1O43426 1573 aa0.64□□□□□ -2.31
SCFD1-217ENST00000555953 NUP210Q8TEM1 1887 aaPredicted RBP0.64□□□□□ -2.31
SCFD1-217ENST00000555953 TRAV36DV7A0A075B6V5 113 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TRAV13-1A0A0B4J241 112 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 LOC107984156A0A0G2JMH3 177 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TRBV27A0A0K0K1C4 114 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 H3BMG7 143 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 J3KT08 172 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TNFSF15O95150 251 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TCRAP04437 139 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 SLC25A5P05141 298 aaKnown RBP0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TMEM244Q5VVB8 128 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 FOXI2Q6ZQN5 318 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 GKN2Q86XP6 184 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 ARL17AQ8IVW1 177 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 OR9Q1Q8NGQ5 310 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 OR10AG1Q8NH19 301 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 ISOC1Q96CN7 298 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 PRELID3AQ96N28 172 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 AIF1LQ9BQI0 150 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 HSPB8Q9UJY1 196 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 NOTCH1P46531 2555 aa0.63□□□□□ -2.31
SCFD1-217ENST00000555953 TRBV7-6A0A0J9YX20 115 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 C9JAW5 83 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 DEGS1O15121 323 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 LYRM1O43325 122 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 CD14P08571 375 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 PRB4P10163 310 aaPredicted RBP0.62□□□□□ -2.31
SCFD1-217ENST00000555953 SLC25A4P12235 298 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 FABP4P15090 132 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 EFNA4P52798 201 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 DIAPH2-AS1Q14236 149 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 LINC00575Q6W349 94 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 MORN4Q8NDC4 146 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 OR51A4Q8NGJ6 313 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 NAT14Q8WUY8 206 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 TMEM138Q9NPI0 162 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 BATF3Q9NR55 127 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 GSKIPQ9P0R6 139 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 HIGD1AQ9Y241 93 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 LAMTOR2Q9Y2Q5 125 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 DLC1Q96QB1 1528 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 OVOS2A0A0G2JMS6 1433 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 FANCMQ8IYD8 2048 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 USP54Q70EL1 1684 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 DSPPQ9NZW4 1301 aa0.62□□□□□ -2.31
SCFD1-217ENST00000555953 ZGRF1Q86YA3 2104 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 A0A1W2PPM0 123 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 M0R129 80 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 TFF1P04155 84 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 RPL22P35268 128 aaKnown RBP0.61□□□□□ -2.31
SCFD1-217ENST00000555953 MAXP61244 160 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 RPS28P62857 69 aaKnown RBP0.61□□□□□ -2.31
SCFD1-217ENST00000555953 BLCAPP62952 87 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 Q8N6K4 173 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 OR10AC1Q8NH08 325 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 PYDC1Q8WXC3 89 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 MCEEQ96PE7 176 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 OR4C12Q96R67 309 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 TPRKBQ9Y3C4 175 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 HSPB11Q9Y547 144 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 PTPRDP23468 1912 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 KIAA1549LQ6ZVL6 1849 aa0.61□□□□□ -2.31
SCFD1-217ENST00000555953 C3orf85A0A1B0GTC6 90 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 A0A1B0GX51 115 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 A6NN06 94 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 ZNF727A8MUV8 499 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 JMJD7-PLA2G4BH0Y9G9 81 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CDC42EP2O14613 210 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 PPYP01298 95 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 IGLV3-1P01715 115 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CMPK1P30085 196 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CKS1BP61024 79 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 SNRPD3P62318 126 aaKnown RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 PSPHP78330 225 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 HIST1H1AQ02539 215 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CIRBPQ14011 172 aaKnown RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CSAG1Q6PB30 78 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 TET1Q8NFU7 2136 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 SKA2Q8WVK7 121 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 ANP32BQ92688 251 aaKnown RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 LXNQ9BS40 222 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 CST11Q9H112 138 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 WFDC10AQ9H1F0 79 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 TCEAL2Q9H3H9 227 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-217ENST00000555953 A2MP01023 1474 aa0.6□□□□□ -2.31
SCFD1-217ENST00000555953 FBN2P35556 2912 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 FGD6Q6ZV73 1430 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 FAM236AA0A1B0GUQ0 79 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 FAM236BA0A1B0GV22 79 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 PFDN1O60925 122 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 FAM107AO95990 144 aa0.59□□□□□ -2.31
SCFD1-217ENST00000555953 HBDP02042 147 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms