RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ENSAO43768 121 aaKnown RBP6.03□□□□□ -1.44
LIMA1-216ENST00000552909 KIR2DS2P43631 304 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 BRD3OSQ6XYD6 125 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 LY6G5BQ8NDX9 201 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 HINT2Q9BX68 163 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 SIGLEC8Q9NYZ4 499 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 GNG12Q9UBI6 72 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 FOXA2Q9Y261 457 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-216ENST00000552909 ANK2Q01484 3957 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-216ENST00000552909 PROP1O75360 226 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 LGALS9BQ3B8N2 356 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 TMEM177Q53S58 311 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 LGALS9CQ6DKI2 356 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 OR8A1Q8NGG7 326 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 LEAP2Q969E1 77 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 GPR82Q96P67 336 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 SPAG8Q99932 426 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-216ENST00000552909 PAXXQ9BUH6 204 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 PRSS22Q9GZN4 317 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 SIRPDQ9H106 197 aa6.03□□□□□ -1.44
LIMA1-216ENST00000552909 MRPL16Q9NX20 251 aaKnown RBP6.03□□□□□ -1.44
LIMA1-216ENST00000552909 CT45A6P0DMU7 189 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 CT45A5P0DMU8 189 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 CT45A7P0DMV0 189 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 PYYP10082 97 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 GCSHP23434 173 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 NMUP48645 174 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 TCTAP57738 103 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 LOXL3P58215 753 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 GNG5P63218 68 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 WFDC2Q14508 124 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 C5orf64Q2M2E5 130 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 KRTAP24-1Q3LI83 254 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 CT45A1Q5HYN5 189 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 UTF1Q5T230 341 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 MORN5Q5VZ52 161 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 RUSC1-AS1Q66K80 236 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 MOB3BQ86TA1 216 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 PRSS3P2Q8NHM4 247 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 CT45A3Q8NHU0 189 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 DAZAP1Q96EP5 407 aaKnown RBP6.02□□□□□ -1.45
LIMA1-216ENST00000552909 ESM1Q9NQ30 184 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 TMEM14BQ9NUH8 114 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF492Q9P255 531 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 ONECUT1Q9UBC0 465 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 LINC00312Q9Y6C7 94 aa6.02□□□□□ -1.45
LIMA1-216ENST00000552909 CENPVL3A0A0U1RRI6 287 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 CCL3L1P16619 93 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF134P52741 427 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 TM4SF20Q53R12 229 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 RPL39P5Q59GN2 51 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 OR9G1Q8NH87 305 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 DUX5Q96PT3 197 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 RAB9BQ9NP90 201 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 EPDR1Q9UM22 224 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 F11RQ9Y624 299 aaKnown RBP6.01□□□□□ -1.45
LIMA1-216ENST00000552909 A0A1W2PRD5 423 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 A0A1W2PRF3 423 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 A0A1W2PRM7 423 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 SRRM4A7MD48 611 aaKnown RBP6.01□□□□□ -1.45
LIMA1-216ENST00000552909 COX7A2P2O60397 106 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 SLC25A5P05141 298 aaKnown RBP6.01□□□□□ -1.45
LIMA1-216ENST00000552909 CACNG7P62955 275 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 LINC00322Q6ZN03 302 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-216ENST00000552909 VMO1Q7Z5L0 202 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 PCP2Q8IVA1 136 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 C8orf46Q8TAG6 207 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 SGK494Q96LW2 274 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF714Q96N38 554 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 MLST8Q9BVC4 326 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 JPT1Q9UK76 154 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 KLF12Q9Y4X4 402 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 TRRAPQ9Y4A5 3859 aa6.01□□□□□ -1.45
LIMA1-216ENST00000552909 C19orf71A6NCJ1 209 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 TSPAN13O95857 204 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 MOSP00540 346 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 FXYD2P54710 66 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 KLRD1Q13241 179 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 ETDBQ3ZM63 59 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 C10orf113Q5VZT2 155 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 PDPNQ86YL7 162 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 TEX29Q8N6K0 151 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 OR1L4Q8NGR5 311 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 ZNF418Q8TF45 676 aaPredicted RBP6□□□□□ -1.45
LIMA1-216ENST00000552909 ARPC1AQ92747 370 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 LINC00574Q9H8X3 128 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 TET2Q6N021 2002 aaPredicted RBP6□□□□□ -1.45
LIMA1-216ENST00000552909 K7ERJ3 54 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 CT45A10P0DMU9 189 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 MYOD1P15172 320 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 MYCNOSP40205 109 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 ATP5IP56385 69 aaPredicted RBP6□□□□□ -1.45
LIMA1-216ENST00000552909 HILS1P60008 231 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 PRCDQ00LT1 54 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 DEFB112Q30KQ8 113 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 SH2D6Q7Z4S9 175 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 OR5AN1Q8NGI8 311 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 DDB2Q92466 427 aa6□□□□□ -1.45
LIMA1-216ENST00000552909 FXYD5Q96DB9 178 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms