RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 IGKV2D-40P01614 121 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 CBLN1P23435 193 aa10.22□□□□□ -0.77
PTCH1-215ENST00000547672 FOXA3P55318 350 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 RBPMS2Q6ZRY4 209 aaKnown RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 OR2D3Q8NGH3 330 aa10.22□□□□□ -0.77
PTCH1-215ENST00000547672 WIPF2Q8TF74 440 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 TRAV2A0A0B4J234 112 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 TMEM213A2RRL7 107 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 TMEM189A5PLL7 270 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 ZNF705FA8MVS1 300 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-215ENST00000547672 HLA-DQA1P01909 254 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 HIST1H1AQ02539 215 aaPredicted RBP10.21□□□□□ -0.77
PTCH1-215ENST00000547672 ACTL10Q5JWF8 245 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 ZFP82Q8N141 532 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 KLHL30-AS1Q8NEE0 82 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 OR11H1Q8NG94 326 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 ZC2HC1AQ96GY0 325 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 VGLL1Q99990 258 aa10.21□□□□□ -0.77
PTCH1-215ENST00000547672 C2orf70A6NJV1 201 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 SOCS3O14543 225 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 RNF182Q8N6D2 247 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 LINC01006Q8NI28 216 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 FRZBQ92765 325 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 AGPAT4-IT1Q9H0P7 198 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 MXRA5Q9NR99 2828 aa10.2□□□□□ -0.78
PTCH1-215ENST00000547672 HIGD1CA8MV81 97 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 FABP9Q0Z7S8 132 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 RIGQ13278 110 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 IGFL4Q6B9Z1 124 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 NUP35Q8NFH5 326 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 OR9G4Q8NGQ1 327 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 NEU1Q99519 415 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 RNF114Q9Y508 228 aa10.19□□□□□ -0.78
PTCH1-215ENST00000547672 CELSR1Q9NYQ6 3014 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 C5orf52A6NGY3 159 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BKO60814 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 DUSP14O95147 198 aaKnown RBP10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BJP06899 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 TRGC1P0CF51 173 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BOP23527 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HLA-DMBP28068 263 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BBP33778 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 TCL1AP56279 114 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 NDUFA6P56556 154 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BDP58876 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 RAB4BP61018 213 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BCP62807 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST2H2BEQ16778 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 TCTEX1D4Q5JR98 221 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BHQ93079 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BNQ99877 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 HIST1H2BMQ99879 126 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 MS4A6AQ9H2W1 248 aa10.18□□□□□ -0.78
PTCH1-215ENST00000547672 TRAV25A0A0B4J276 109 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 SNURFLB1AK76 121 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 F2Z2F3 143 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 SH2D1AO60880 128 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 CMC4P56277 68 aaPredicted RBP10.17□□□□□ -0.78
PTCH1-215ENST00000547672 SNRPEP62304 92 aaKnown RBP10.17□□□□□ -0.78
PTCH1-215ENST00000547672 HBBP68871 147 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 EBLN2Q6P2I7 272 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 LINC00322Q6ZN03 302 aaPredicted RBP10.17□□□□□ -0.78
PTCH1-215ENST00000547672 OR8A1Q8NGG7 326 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 DYNLRB2Q8TF09 96 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 C8orf49Q96NF6 230 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 MRPL18Q9H0U6 180 aaKnown RBP10.17□□□□□ -0.78
PTCH1-215ENST00000547672 SIGLEC8Q9NYZ4 499 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 VPS13CQ709C8 3753 aa10.17□□□□□ -0.78
PTCH1-215ENST00000547672 A0A1B0GUT8 65 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 PRAC2D3DTV9 90 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 K7EQG2 157 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 CCL24O00175 119 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 UBE2CO00762 179 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 APCSP02743 223 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 HOXA5P20719 270 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 CRIP1P50238 77 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 ERCC8Q13216 396 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 DCANP1Q8TF63 244 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 ODF3Q96PU9 254 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 SMR3AQ99954 134 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 HIVEP2P31629 2446 aa10.16□□□□□ -0.78
PTCH1-215ENST00000547672 PHOX2AO14813 284 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 CRLF1O75462 422 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 CA1P00915 261 aaPredicted RBP10.15□□□□□ -0.78
PTCH1-215ENST00000547672 ORM1P02763 201 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 TSPOP30536 169 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 LEPP41159 167 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 SLURP1P55000 103 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 MRPL54Q6P161 138 aaKnown RBP10.15□□□□□ -0.78
PTCH1-215ENST00000547672 PGLYRP4Q96LB8 373 aa10.15□□□□□ -0.78
PTCH1-215ENST00000547672 NBPF19A0A087WUL8 3843 aa10.15□□□□□ -0.79
PTCH1-215ENST00000547672 IGKV3-7A0A075B6H7 116 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 TRAV21A0A0B4J279 112 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 CD28P10747 220 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 S100A2P29034 98 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 LINC01559Q495D7 138 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 COA6Q5JTJ3 125 aaKnown RBP10.14□□□□□ -0.79
PTCH1-215ENST00000547672 TMEM136Q6ZRR5 245 aa10.14□□□□□ -0.79
PTCH1-215ENST00000547672 WFDC3Q8IUB2 231 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms